DRSC/TRiP Functional Genomics Resources

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Protein Alignment schlank and Cers4

DIOPT Version :9

Sequence 1:NP_652526.1 Gene:schlank / 50392 FlyBaseID:FBgn0040918 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001100587.1 Gene:Cers4 / 304208 RGDID:1309303 Length:393 Species:Rattus norvegicus


Alignment Length:384 Identity:148/384 - (38%)
Similarity:228/384 - (59%) Gaps:11/384 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LNEFSNVFWSTHIWLPPNTTWADIAPGSRPDVVHANYKDLIWPIPFAAVVMLVRYTLERFWISPV 68
            |||:   .|....|||||.|||.:.  .|..:|.|:...::..:|.|.|::.:|...|||...|:
  Rat     5 LNEW---LWQETYWLPPNVTWAQLE--DRDGLVFAHPHHVLAALPIALVLVAMRIIFERFVALPL 64

  Fly    69 GKSLGIRSSRPKKAANVPILEKTYAK-STRLDKKKLVPLSKQTDMSEREIERWWRLRRAQDKPST 132
            .:.:|::....:|....|:|||.:.: ..|..:.::|.|:.|..::.|:|:||:|.||.||:|..
  Rat    65 SRWMGVQDPIRRKIKPNPVLEKYFLRMKQRPVETQMVLLASQCGLTLRQIQRWFRRRRNQDRPCL 129

  Fly   133 LVKFCENTWRCIYYLYSFIFGVIVLWDKPWFWDVKSCWYGYPHQSISNDIWWYYMISMSFYWSLT 197
            ..||||.:||.::||.||:.|..:|:.:.|.|....||..||||:::..:.|:|::.:.||.||.
  Rat   130 SKKFCEASWRFVFYLCSFVGGTSILYHESWLWTPALCWENYPHQTLNLALSWWYLLELGFYISLL 194

  Fly   198 GTQFFDVKRKDFWQMFIHHMVTLLLMSLSWVCNLHRVGSLVLVVHDCADIFLEAAKLTKYAKYQK 262
            .|..||:|||||.:...||.||:.|:..|:..||.|:||:||::|||:|..||..|:..||.:|:
  Rat   195 ITLPFDIKRKDFKEQVAHHFVTVGLIVFSYSVNLLRIGSVVLLLHDCSDYLLEGCKMLNYAHFQR 259

  Fly   263 LCDAIFAIFTVVWIVTRLGFYP-RIIYSSSVEAPRILPMFPAYYIFNSLLLMLLVLHVIWTYMIL 326
            .||.:|.||::|:..|||.|:| .:||::..::.:....|..||.|..||.||.:|||.|..:||
  Rat   260 GCDTLFIIFSLVFFYTRLVFFPTEVIYTAVFDSIKNSGPFFGYYFFIVLLGMLQILHVYWFCLIL 324

  Fly   327 KIVVDSLQKGLMSGDIRS----SDSEDLTDSSGNARLTNGSARSKNKSISSAPSDKGSA 381
            :::...|:||.|..||||    |||.|....|...:|.||.||....:|::.|..:.:|
  Rat   325 RMICSFLRKGQMREDIRSDVEESDSSDDEAVSEGPQLKNGMARGSRAAITNGPRSRAAA 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
schlankNP_652526.1 homeodomain 75..131 CDD:238039 18/56 (32%)
TLC 135..334 CDD:214789 84/199 (42%)
Cers4NP_001100587.1 homeodomain <83..126 CDD:238039 15/42 (36%)
TLC 131..332 CDD:214789 84/200 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352737
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5058
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D383274at33208
OrthoFinder 1 1.000 - - FOG0000327
OrthoInspector 1 1.000 - - otm45909
orthoMCL 1 0.900 - - OOG6_100372
Panther 1 1.100 - - O PTHR12560
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X237
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.710

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