DRSC/TRiP Functional Genomics Resources

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Protein Alignment schlank and hyl-1

DIOPT Version :9

Sequence 1:NP_652526.1 Gene:schlank / 50392 FlyBaseID:FBgn0040918 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001294030.1 Gene:hyl-1 / 177660 WormBaseID:WBGene00002043 Length:372 Species:Caenorhabditis elegans


Alignment Length:398 Identity:121/398 - (30%)
Similarity:187/398 - (46%) Gaps:60/398 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDILNEFSNVFWSTHIWLPPNTTWADIAPGSRPDVVHANYKDLIWPIPFAAVVMLVRYTLERFWI 65
            |::.....:.||....|||.|.||.:         |.|.:.||:.||..|..::::|.    .|.
 Worm     1 MEVYRWAMSYFWHEPYWLPRNVTWPE---------VPAKFVDLLVPIYLAIPLVIIRI----LWE 52

  Fly    66 SPVGKS-LGIRSSRPKKAANVPILEKTYAKSTRLDKKKLVPLSKQTDMSEREIERWWRLRRAQDK 129
            |.:|.: |..|::......|:.:|..                            .|..:......
 Worm    53 STIGVTYLYFRTNAYASRKNITLLGC----------------------------MWEHMTGGFAS 89

  Fly   130 PSTLVKFCENTWRCIYYLYSFIFGVIVLWDKPWFWDVKSCWYGYPHQSISNDIWWYYMISMSFYW 194
            .|...|..|..||..||.::|::|:.|:.:..|.:|||.||.|||...:.:.|||||||...||:
 Worm    90 VSRAKKILECFWRFSYYTFAFLYGLYVMKNSSWLYDVKQCWIGYPFHPVPDTIWWYYMIETGFYY 154

  Fly   195 SLTGTQFFDVKRKDFWQMFIHHMVTLLLMSLSWVCNLHRVGSLVLVVHDCADIFLEAAKLTKYAK 259
            ||.....|||:|.||||:.:||::|:.|:|.||..|..|||:|:|:.||.:|:|||..||.:|..
 Worm   155 SLLIGSTFDVRRSDFWQLMVHHVITIFLLSSSWTINFVRVGTLILLSHDVSDVFLEGGKLVRYDA 219

  Fly   260 YQK-LCDAIFAIFTVVWIVTRLGFYPRIIYSSSV-EAPRIL-------------PMFPAYYIFNS 309
            :.| :.:.:|.:|...|:.|||.:||.|:..|:| ||..::             |..|...:|  
 Worm   220 HNKNMTNFMFVLFFSSWVATRLIYYPFIVIRSAVTEAAALIQPDYILWDYQLSPPYAPRLIVF-- 282

  Fly   310 LLLMLLVLHVIWTYMILKIVVDSLQKGLMSGDIRSSDSEDLTDSSGNARLTNGSARSKNKSISSA 374
            .|::|..||:.||::||:|...: ..|..:.|:||....|..:.....|......:.|...:|.:
 Worm   283 ALILLFFLHIFWTFIILRIAYRT-STGGQAKDVRSDSDSDYDEEEMARRERTRLLKKKKNKVSPS 346

  Fly   375 PSDKGSAG 382
            ..|....|
 Worm   347 TDDDDDEG 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
schlankNP_652526.1 homeodomain 75..131 CDD:238039 4/55 (7%)
TLC 135..334 CDD:214789 85/213 (40%)
hyl-1NP_001294030.1 TLC 94..305 CDD:214789 85/212 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 180 1.000 Domainoid score I2089
eggNOG 1 0.900 - - E1_COG5058
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H23634
Inparanoid 1 1.050 204 1.000 Inparanoid score I2440
Isobase 1 0.950 - 0 Normalized mean entropy S3160
OMA 1 1.010 - - QHG49087
OrthoDB 1 1.010 - - D383274at33208
OrthoFinder 1 1.000 - - FOG0000327
OrthoInspector 1 1.000 - - otm14103
orthoMCL 1 0.900 - - OOG6_100372
Panther 1 1.100 - - LDO PTHR12560
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R648
SonicParanoid 1 1.000 - - X237
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.860

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