DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and Whrn

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001008791.1 Gene:Whrn / 73750 MGIID:2682003 Length:918 Species:Mus musculus


Alignment Length:1062 Identity:203/1062 - (19%)
Similarity:329/1062 - (30%) Gaps:381/1062 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 SAALKQDQQQ----QQQQQQESHNNSFNGHH----------------HPPTDTALAPMLSV---- 58
            ||.::|..|.    ..:.::|...:..|.:|                ..|....|.|||.:    
Mouse    37 SANVRQLHQALTALLSEPEREQFTHCLNAYHARRNVFDLVRTLRVLLDSPVKRRLLPMLRLVIPR 101

  Fly    59 -DRAM------------------SPAQSEDSGLAPERGTTYATITLPRNALHLAITFAERNDLSY 104
             |:.:                  .||.:...|..|..   ...::|.|...|..:.|:.|.    
Mouse   102 SDQLLFDQYTAEGLYLPATTPYRQPAWAAPDGAGPGE---VRLVSLRRAKAHEGLGFSIRG---- 159

  Fly   105 PPVVGSLNPVGHAADFLAPGD----------------------RLHQIDGISTIGLSNQKVMNML 147
                ||.:.||.....:.||.                      |:...:.:..:..|.:.|:::.
Mouse   160 ----GSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVY 220

  Fly   148 CAG------------------GSDACPAIVEIEYSLPE---CTVSQ--NSLCVTSKLAQITVER- 188
            .||                  |....|     ..|||:   .|:.|  :....|..|.|...|: 
Mouse   221 SAGRIPGGYVTNHIYTWVDPQGRSTSP-----PSSLPQPHGSTLRQREDDRRSTLHLLQSGDEKK 280

  Fly   189 ------ESGCLGLTLRGGADYPL--IVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQ 245
                  :...||||:||||:|.|  .:|.|.|......:| :|.||::|.|:..|.:.....||.
Mouse   281 VNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAESSG-LKVGDQILEVNGRSFLNILHDEAV 344

  Fly   246 QIIKCGGHVSGYTNLTIEYDVSVVQSVEFSMGPLLIEIERPMNDKLGLVLCNYTAAVPASGSGSS 310
            :::|...|:.    ||:: ||..:.....::                    :.|..:.:|..|.|
Mouse   345 KLLKSSRHLI----LTVK-DVGRLPHARTTV--------------------DQTKWIASSRIGES 384

  Fly   311 TPSS----GEKIEESAGVFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDT 371
            ..:|    |:..||  |.............:....|:|:|..::.|....|.....:....:...
Mouse   385 VANSAGFPGDHTEE--GTSKPGFYKGPAGSQVTLSSLGNQTRALLDDQARHLLTEQERATMMYYL 447

  Fly   372 STGRGYT---------QMQIMPAHALARRGHTTLGSPKYSFSTLESRKSSTAGRQRQRF------ 421
            :..||.|         ..:::..||              .||.|...:|..:.:...||      
Mouse   448 AQYRGGTISVEAMVMALFELLNTHA--------------KFSLLSEVRSIISPQDLDRFDHLVLR 498

  Fly   422 ----ARKSSLPLENPACGTPGSTGGSMGTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILS 482
                :.|:..| ..|..|...|......||     ||.|                 |||.    |
Mouse   499 REIESMKARQP-PGPGVGDTYSMVSYSDTG-----SSTG-----------------SHGT----S 536

  Fly   483 ETVSGSGGSGAVAIAQIVPDSVADRSGCIQAGDRIVAINKMYSLDAAAMRQLLEG-GSSRNGASN 546
            .|||                         .|.:|:     ::.:|.......||| |.:..|::|
Mouse   537 TTVS-------------------------SARERL-----LWLIDLMENTLDLEGTGETTQGSTN 571

  Fly   547 GTPANWLELEIEFDMPDAVVPASGVFSVK-------LLRAGKCGLG----------LSVSGSSHG 594
            ..|        :..:.|...|:..:..:|       |.:.....||          ..:|.::|.
Mouse   572 ALP--------DVSVDDVKSPSEDLPGIKPPPPPPPLAQGHDRLLGQPRKPGREDPAPLSSAAHS 628

  Fly   595 GLVISDVKMGSP-------------------------AHRSGSLRSG-DILLA-VDQHPVQHFNV 632
            |:|.|..:..||                         :|.:.|.|.. |..|| |:|||:..|  
Mouse   629 GIVFSAPRNRSPPPGTAPTPGPSSAQDSPSSPIYASISHANPSSRKPLDTHLALVNQHPIGPF-- 691

  Fly   633 DALLKEEGRSQNPSHSSSDFTTLTIKRIVLPDFLPMSSPIYSNCPASGINLGMGMGVSTSTDHDL 697
                   .|.|:|.|                    :.||     ||.....|..:...:.::|  
Mouse   692 -------PRVQSPPH--------------------LKSP-----PAETPGAGACLPPPSPSEH-- 722

  Fly   698 YSSAYVTAGKYADCVSLKSRTPQPDYFRV---PSMDDASLQSVQLRSG------SGSNGGNQAAN 753
              ...|.|.::...|.:.....:||...|   |....||..|....||      ||.:.|...|:
Mouse   723 --PDAVGANQHFVLVEVHRPDSEPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGETEAS 785

  Fly   754 SWSTGVNSRSYVAPPNTQSLTTELPEEEDEQEQMYPGYELNRYASVDCTALPPPMENKVYGSAAS 818
            :...|         ..|.|...:..:|:...|:...|                  .||..|....
Mouse   786 TSGRG---------RQTASAKNKNGKEQPRTERTAEG------------------ANKPPGLLEP 823

  Fly   819 SSSKSSGSSLHQIIFTVRLEPKGGLLGITLAGS----EDITKSITISGLVEGGIAHKNGQIHVGD 879
            :|:            .||:......|||.:.|.    :.:.:.:||.   .||.||..||:.||.
Mouse   824 TST------------LVRVRKSAATLGIAIEGGANTRQPLPRIVTIQ---RGGSAHNCGQLKVGH 873

  Fly   880 QLLAIDEHSVQGMPLSHATSLL 901
            .:|.::..:::|.....|..::
Mouse   874 VILEVNGQTLRGKEHKEAARII 895

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 14/86 (16%)
PDZ_signaling 183..254 CDD:238492 25/79 (32%)
PDZ_signaling 278..375 CDD:238492 14/100 (14%)
PDZ 496..>521 CDD:294084 2/24 (8%)
PDZ_signaling 571..658 CDD:238492 26/130 (20%)
PDZ_signaling 832..913 CDD:238492 19/74 (26%)
PDZ_signaling 973..1055 CDD:238492
WhrnNP_001008791.1 HN_L-whirlin_R1_like 38..113 CDD:259822 12/74 (16%)
PDZ_signaling 139..216 CDD:238492 13/84 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 240..266 7/30 (23%)
PDZ_signaling 278..358 CDD:238492 27/84 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 387..407 5/21 (24%)
HN_L-whirlin_R2_like 420..500 CDD:259823 15/93 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 503..538 14/61 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 560..824 65/336 (19%)
PDZ_signaling 827..898 CDD:238492 19/72 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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