DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and Pard3b

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_006496361.1 Gene:Pard3b / 72823 MGIID:1919301 Length:1238 Species:Mus musculus


Alignment Length:1087 Identity:203/1087 - (18%)
Similarity:348/1087 - (32%) Gaps:373/1087 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 DQQQQQQQQQESHNNSFNGHHHPPTDTALAPMLSVDRAMSPAQSEDSGLAPERGTTYATITLPRN 88
            |:|:..|:.:....|..:.......:|.:|..|:   |..|...|              |.:..:
Mouse   115 DEQEPLQKTESPGGNPADRQSPDAFETEVAAQLA---AFKPVGGE--------------IVVTPS 162

  Fly    89 ALHLAITFAERNDLSYPPVVGSLNPVGHAADFLA--PGDRLHQIDGISTIGLSNQKVMNMLCAGG 151
            ||.|......|.  |..|..|   |...|....|  .|..|..:...||..:.|::.||...|| 
Mouse   163 ALKLGTPLLVRR--SSDPAPG---PHADAQPSTASLSGQSLKPVVLDSTQNVENKEAMNGEQAG- 221

  Fly   152 SDACPAIVEIEYSLPECTVSQNSLCVTSKLAQITVERE-------------SG-CLGLTLRGGAD 202
                         |......::.|...::..:|:.|.:             || .|||.:||   
Mouse   222 -------------LLSLHRPKDELSDMTRAVEISGEGDPLGIHVVPFFSSLSGRILGLFIRG--- 270

  Fly   203 YPLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIKCGG-------HVSGYTNL 260
                   :..:....:.|..:..:.:::::||.|:.||.|:||.:.:...       ||....|.
Mouse   271 -------IEENSRCKQEGLFQENECIVKINNVELLDKTFAQAQDVFRQAMKSPSVILHVLLPQNR 328

  Fly   261 TIEYDVSVVQSVEFSMGPLLI----------EIERPMNDKLGLVLCNYTAA-------------- 301
            . :|:.||:       |||.|          :...|...|.||...:.|.|              
Mouse   329 E-QYEKSVI-------GPLNIFGNNDGASRTKAAPPARGKPGLKAVHLTRASSPEGEEPASPQQS 385

  Fly   302 ----VPASGSGSSTPS-----------SGEKIE-------ESAG---------------VFIASI 329
                ||..|...|:||           :.:||:       |..|               :|:.:|
Mouse   386 KSPRVPRLGRKPSSPSLSPLMGFGSKKNAKKIKIDLKKGPEGLGFTVVTRDSSIHGPGPIFVKNI 450

  Fly   330 LPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTGRGYTQMQIMPAHALARRGHT 394
            ||...|.:.|.|..||::|.::...:  |..:.:|::.:| .||.:|.|...:     :||:..:
Mouse   451 LPKGAAVKDGRLQSGDRILEVNGRDV--TGRTQEELVAML-RSTKQGETVSLV-----IARQEGS 507

  Fly   395 TL-----GSPKYSFSTLESRKSSTAGRQRQRFARKSSLPLENPACGTPGSTGGSMGTGGIHGSSS 454
            .|     |.|.....:|||               ...|.||.|                ::.|.|
Mouse   508 FLPRELKGEPDCYALSLES---------------SEQLTLEIP----------------LNDSGS 541

  Fly   455 LGMGLGLCRAESFPVLLDCSHGAGIILSETVSGSGGSGAVAIAQIVPDSVADRSGCIQAGDRIVA 519
            .|:|:.|...:|               .||.:..|    :.|..|:....|.:.|.::..|:::|
Mouse   542 AGLGVSLKGNKS---------------RETGTDLG----IFIKSIIHGGAAFKDGRLRMNDQLIA 587

  Fly   520 INKMYSLDAAAMRQLLEGGSSRNGASNGTPANWL--ELEIEFDMPDAVVPASGVFSVKLLR---- 578
            :|                |.:..|.||......|  .:.:|.::       .|:..:.:||    
Mouse   588 VN----------------GETLLGKSNHEAMETLRRSMSMEGNI-------RGMIQLVILRRPER 629

  Fly   579 ----AGKCGLGLSVSGSSHGGLVISDVKMGSPAHRSGSLRSGDILLAVDQHPVQHFNVDALLKEE 639
                ..:|| .||..|..:....:      |.:.|:.|    .||.....:..|....|.||..:
Mouse   630 PLEELSECG-ALSRPGFENCQEAL------STSRRNDS----SILYPFGTYSPQDKRKDLLLPSD 683

  Fly   640 GRSQNP------------------SHSSS------------DFTTLT---------IKRIVLPDF 665
            |.::|.                  ||||.            :|.|:|         :|.....|.
Mouse   684 GWAENEVPPSPPPHPALEWGLEDFSHSSGVDSTGYFPDQHVNFRTVTPVRQPELINLKASKSMDL 748

  Fly   666 LPMSSPIYS----NCPASGINLGMGMGVSTSTDHDLYSSAYVTAGKYADCVSLKSRTPQPDYFRV 726
            :|....:.|    ...:.|.:.|..:|:..|:..:...:|.....|.    .|....|:|...| 
Mouse   749 VPDEGKVQSLADRRSDSPGKDFGPTLGLKKSSSLESLQTAVAEVRKN----DLPFHRPRPHMVR- 808

  Fly   727 PSMDDASLQSVQLRSGSGSNGGNQAANSWSTGVNSRSYVAPPNTQSLTTELPEEEDEQEQMYPGY 791
                           |.|.|...:||       ..:||..|            ||.:.:.:....
Mouse   809 ---------------GRGCNESFRAA-------IDKSYDGP------------EEADADGLSDKS 839

  Fly   792 ELNRYASVDCTALP---PPMENKVYGSAASSSSKSSGSSLHQIIFTVRLEPKGGLLGITLAGSED 853
            ..:.:.:::|.:.|   |.::|      ..:.:|:       |..|...|.|.|           
Mouse   840 SRSGHTALNCESAPQGNPELDN------VENKAKN-------IKKTKEKEKKKG----------- 880

  Fly   854 ITKSITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQGMPLSHATSLLQNLGDLVDLKILRSHDL 918
                              .|::.|.::.|..:....:..........:...|...|.|:.::...
Mouse   881 ------------------KGKLKVKEKKLKEEHEDAERKMKRKGFGAMLRFGKKKDDKVGKAEQK 927

  Fly   919 -ANGSHLPQTQAIYAKVQRRPRSPSANTEASKESGSGNANGGGAVNG 964
             |..|..|:.:.:....:.|.|..:.:.|..::...|..:...||.|
Mouse   928 GAQKSGHPEEEELERMKEERERIGAKHQELREKQARGLVDYATAVTG 974

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 18/66 (27%)
PDZ_signaling 183..254 CDD:238492 18/91 (20%)
PDZ_signaling 278..375 CDD:238492 34/157 (22%)
PDZ 496..>521 CDD:294084 6/24 (25%)
PDZ_signaling 571..658 CDD:238492 25/133 (19%)
PDZ_signaling 832..913 CDD:238492 10/80 (13%)
PDZ_signaling 973..1055 CDD:238492
Pard3bXP_006496361.1 DUF3534 2..74 CDD:338230
PDZ_signaling 236..323 CDD:238492 19/96 (20%)
PDZ 415..504 CDD:214570 22/96 (23%)
PDZ_signaling 536..624 CDD:238492 23/129 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.