DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and Pdzph1

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_081277.1 Gene:Pdzph1 / 69239 MGIID:1916489 Length:1238 Species:Mus musculus


Alignment Length:1123 Identity:202/1123 - (17%)
Similarity:349/1123 - (31%) Gaps:345/1123 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IGGCVPGK-SAALKQDQQQQQQQQQESHNNSFNGHHHPPTDTALAPMLSV----DRAMSPAQSED 69
            |...:.|| :::.....::|.......|.:..||:..|.....|..:|.|    ||..|      
Mouse    53 ITASINGKQNSSFLVKNEKQAPSDSTIHKSMENGYTPPAISPQLEEVLPVAMFNDREKS------ 111

  Fly    70 SGLAPERGTTYATITLPRNALHLAITFAERNDLSYPPVVGSLNPVGHAADFLAPGDRLHQID-GI 133
               .|.:.||.                      .:|..|..|.|        |.|..:.::. |.
Mouse   112 ---LPGKITTE----------------------DFPNTVEVLKP--------AKGKFIREVKCGA 143

  Fly   134 STIGLSNQKVMNMLCAGGSD-----ACPAIVEIEYSLPECTVSQNSLCVTSKLAQITVERESGCL 193
            ..:.:...|  ::.|..|:.     .||...: .||:.:......|....||...:..|.....:
Mouse   144 FNVHVETTK--SIFCKTGAQNLTKRRCPTCHQ-HYSVQQVWRGSKSRGHFSKHRTVLAEEFKRRV 205

  Fly   194 GLTLRGG---ADYPLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIKCGGHVS 255
            ..|.|.|   ::.|.:                          |:|::||.:. .:.|.|     .
Mouse   206 PSTYRRGVSRSEVPSV--------------------------NISIVGKEIM-VEYISK-----K 238

  Fly   256 GYTNLTIEYDVSVVQSVEFSMGPLLIEIERPMNDKLGLVLCNYTAAVP---------------AS 305
            ..|.:.|.:..|:.:..:...|||....:.|         |. :|:.|               :|
Mouse   239 QNTFINICHPNSIGKLTKHRRGPLKHTTDEP---------CE-SASQPGINHPENQRLENQHQSS 293

  Fly   306 GSGSSTPSSGEKIE-ESAGVFIASIL--PASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMT 367
            .:....|.|...:: |::...:.|:.  |....::...|....     ||:....:|.||.:|:.
Mouse   294 DAFHDAPCSVNAVQKENSDTIVVSLSSPPRREKEKPNTLPSAP-----DDSEEGESATSPQKVLQ 353

  Fly   368 ILDTS--TGRGYTQMQIMPAHALARRGHTTLGSPKYSFSTLESRKSSTAGRQRQRFARKSSLPLE 430
            |....  ....:|....:|..:...| .|:|.:...|..:||..:.....|:.....|::..|..
Mouse   354 ITQDKPLEQHCFTADSCLPTSSETLR-TTSLNNVDLSKMSLEDSRDVDEERKNSSDVRENITPDS 417

  Fly   431 NPACGTPGSTGGSMGTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILSETVSGSGGSGAVA 495
            .....|.|:.|.......|                 .|:             :..|||..|....
Mouse   418 QVQPCTAGTNGPLSAVNSI-----------------IPI-------------QDASGSEFSPLSF 452

  Fly   496 IAQIVPDSVADRSGCIQAGDRIVAINKMYSLDAAAMRQLLEGGSSRNGASNGTPANWLELEIEFD 560
            :...:..:.||..||  .|:..:.               .||..|.|             .:.|.
Mouse   453 LTLQLLGAKADNMGC--RGEETLP---------------GEGHESSN-------------SLLFP 487

  Fly   561 MPDAVVPASGVFSVKLLRAGKCG-----LGLSVSGSSHGGLVISDVKMGSPAHRSGSLRSGDILL 620
            :.:.....|.:.|.. .|..:|.     .|.:.|.|.:.|:.....|:........||       
Mouse   488 VSEQAAKPSPLLSPS-HRVSRCSEPVETTGNTFSFSQYIGVEREQEKVHYRLINKASL------- 544

  Fly   621 AVDQHPVQHFNVDALLKEEGRSQNPSHSSSDFTTLTIKRIVLPDFLPMSSPIYSNCPASGINLGM 685
                |.....|:..|.:::  .|:|:      .|:....|::|     .||::.|..:|      
Mouse   545 ----HNDSSSNIQPLERKD--PQSPA------VTIASCSILVP-----KSPLHGNIHSS------ 586

  Fly   686 GMGVSTSTDHDLYSSAYVTAGKYADCVSLKSRTPQPDYFRVPSMDDASLQSVQLRSGSGSNGGNQ 750
             :..:.:.||          ..:|:...| ||...|....:.:..:.||.:...:..:       
Mouse   587 -VEWNQTEDH----------ANHAERAGL-SRMEVPVMASITNELEQSLATQNYKEST------- 632

  Fly   751 AANSWSTGVNSRSYVAPPNTQSLTTELPEEEDEQEQMYP--------GYE-LNRYASVDCTALPP 806
                    |:|.|.:|..|.:..|:.|....|:..|..|        .:| |.|....:..:...
Mouse   633 --------VDSNSPMAIRNPRESTSYLENVGDDASQALPVVKNMCHRNFEDLTRENQNEICSQMD 689

  Fly   807 PMENKVYGSAASSSSKSSGSSLHQIIFTVRLEPKGGLLGITLAGSEDIT-----KSITISGL--- 863
            .::|       ||.|.|.|.:..::.          |:..|||..:|..     |:..::..   
Mouse   690 FLQN-------SSESTSVGHTTEKLF----------LIDKTLASDDDSNSNRDHKTCGLNNFQQE 737

  Fly   864 -------------VEGGIAHKNGQI--HVGDQLLAIDEHSV---QGMPLSHATSLLQNLGDLVDL 910
                         .|.|......::  |..|.||:..:...   |.:.:::...|.|.|.     
Mouse   738 PAECQRTTSRVYCEESGNQRYPTEVSCHPVDILLSPQKQKALKDQNLEINNPRKLSQELA----- 797

  Fly   911 KILRSHDLANGSHLPQTQAIYAKVQRRPRSPSANTEASKESGSGNANGGGAVNGNSGSGKPRVFH 975
              ||....::||   |.:||....:||        :..|:....::.||.:|..|...|      
Mouse   798 --LRGGRASDGS---QEEAIEQWARRR--------QQFKDGKRCSSAGGSSVISNFTEG------ 843

  Fly   976 VTLYKDKVYD-DYGFSVSDGLYERGVFINRIRS---------GGPADMCGLLKPFDRIMQVNEMK 1030
             ::..|.|:. |:||.|.  :.|:|.:.....|         |.|.|....|....|.:.|.|. 
Mouse   844 -SITSDDVHSVDFGFRVD--IEEKGFYTENFHSTAWVFRGDDGNPEDSPRCLSKKPRPVAVRER- 904

  Fly  1031 TQDFDCCLTVPLIAAAGD 1048
                    ||.|....||
Mouse   905 --------TVRLFKGTGD 914

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 8/65 (12%)
PDZ_signaling 183..254 CDD:238492 11/73 (15%)
PDZ_signaling 278..375 CDD:238492 20/116 (17%)
PDZ 496..>521 CDD:294084 5/24 (21%)
PDZ_signaling 571..658 CDD:238492 16/91 (18%)
PDZ_signaling 832..913 CDD:238492 16/106 (15%)
PDZ_signaling 973..1055 CDD:238492 21/86 (24%)
Pdzph1NP_081277.1 PDZ_signaling 903..981 CDD:238492 6/21 (29%)
PH-like 986..1093 CDD:302622
PH 993..1094 CDD:278594
PH-like 1123..1215 CDD:302622
PH 1125..1216 CDD:278594
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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