DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and Pdzd2

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001074533.1 Gene:Pdzd2 / 68070 MGIID:1922394 Length:2796 Species:Mus musculus


Alignment Length:892 Identity:188/892 - (21%)
Similarity:314/892 - (35%) Gaps:231/892 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   259 NLTIEYDVSVVQSVEFSMGPLLIEIERPMND--KLGLVLCNYTAAVPASGSGSSTPSSGEKIEES 321
            ||.:|.:....:.....|....:.:.:.:.|  .:||...|    :|..|........|:|.:..
Mouse    49 NLAVEENTVPPEHSPPEMEICTVYLTKQLGDTETVGLSFGN----IPVFGDYGEKRRGGKKRKTH 109

  Fly   322 AG-------VFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTGRGYTQ 379
            .|       :::..:...|.|.:.|.:.:.|::||::           .::|..:|.| |..|..
Mouse   110 QGPVLDVGCIWVTELRKNSPAGKSGKVRLRDEILSLN-----------GQLMVGVDVS-GASYLA 162

  Fly   380 MQ---------IM------PAHALARRGHTTLGSPKYSFSTLE-SRKSSTAGRQRQRFARKSSLP 428
            .|         ||      .|| |...|::...|......||| ..::|..|::.::|...|...
Mouse   163 EQCWNGGFIYLIMLRRFKQKAH-LTYNGNSGNSSEPGETPTLELGDQTSKKGKRTRKFGVISRPA 226

  Fly   429 L--------ENPACGTPGSTGGSMGTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILSETV 485
            :        .|..|.|.......:..|   ..|.||.|... ..|:.|..|....|..:..||  
Mouse   227 IIKAPEDSKSNSGCDTADDPSSELENG---TDSELGNGHAF-ELENGPNSLKDVAGPHLERSE-- 285

  Fly   486 SGSGGSGAVAIAQIVPDSVADRSGCIQAGDRIVAINKMYSLDAAAMRQLLEGGSSRNGASNGTPA 550
                               |||    :|..|:.......| |:...|:.     |:.|.:|    
Mouse   286 -------------------ADR----EAELRVPKTEAPLS-DSNDKRRF-----SKTGKTN---- 317

  Fly   551 NWLELEIEFDMPDAVV--PASGVFSVKLLRAGKCGLGLSVSG------SSHGGLVISDVKMGSPA 607
                    |...|::.  ....::.::||:... |||:.|||      |.| .:|::.||.|..|
Mouse   318 --------FQSSDSLAREEVGRIWKMELLKESD-GLGIQVSGGRGSKRSPH-AIVVTQVKEGGAA 372

  Fly   608 HRSGSLRSGDILLAVDQH---PVQHFNVDALLKE-EGRSQ----NPSHSSSDFTTLTIKRIVLPD 664
            ||.|.|..||.||.::.|   .:.|....|:|:. .|..|    :...|:.|...||.|.  |||
Mouse   373 HRDGRLSLGDELLVINGHLLVGLSHEEAVAILRSATGMVQLVVASKESSAEDLLKLTSKS--LPD 435

  Fly   665 FLPMSSPIYS--------------NCPASGINLGMGMGVSTSTDHDLYSSAYVTAGKYADC---- 711
            .......|.|              ....|....|..:|...|.|   ..|:..:.|...:.    
Mouse   436 LTSSVEDISSWTDNEDQEAARDDEEGTGSAAVRGTMLGSEESQD---VGSSEESKGNNLESPKQG 497

  Fly   712 ---VSLKSRTPQPDYFRVPSMDDASLQSVQLRSGSG-------SNGGNQAANSW---STGVNSRS 763
               :.||||. .....|:.|:::  ...:.:|:|..       |..|.:.:...   |||.:...
Mouse   498 NSKMKLKSRL-SGGVHRLESVEE--YNELMVRNGDPRIRMLEVSRDGRKHSLPQLLDSTGTSQEY 559

  Fly   764 YVAPPNTQSLTTELPEEEDEQEQMYPGYELNRYASVDCTALPPPMENKVYGSAASSSSKSSGSSL 828
            ::...:|:||:|...|..         :.|.|.:.:....|                        
Mouse   560 HIVKKSTRSLSTTHVESP---------WRLIRPSVISIIGL------------------------ 591

  Fly   829 HQIIFTVRLEPKGGLLGITLAGSEDITK---SITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQ 890
                    .:.||..||.::||..|..:   .|.:..:...|.|.::|::..||::|.::...::
Mouse   592 --------YKEKGKGLGFSIAGGRDCVRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIK 648

  Fly   891 GMPLSHATSLLQNLGDLVDLKILRSHDLANGSHLPQTQAIYAKVQRRPRSPSANTEASKESGSGN 955
            |:....|....:.:...:.:..:|: .|.:.|..|.:...:   ..|..|||.|:.....:|.|.
Mouse   649 GLTFQEAIHTFKQIRSGLFVLTVRT-KLLSPSLTPCSTPTH---MSRSSSPSFNSSGGAPAGGGQ 709

  Fly   956 ANGGGAVNGNSGSG-KPR-VFHVTLYKDKVYDDYGFSVSDGL---------YERGVFINRIRSGG 1009
            ..||.|..|....| |.| |..|||.|:.       .|..|:         ...|::|:.:..|.
Mouse   710 DEGGSASLGRKAPGPKDRIVMEVTLNKEP-------RVGLGIGACCLALENSPPGIYIHSLAPGS 767

  Fly  1010 PADMCGLLKPFDRIMQVNEMKTQDFDCCLTVPLIAAAGDKIEMIMQR 1056
            .|.|...|...|:|::||.:..:.           ||..|:..|:.:
Mouse   768 VAKMESNLSRGDQILEVNSVNVRH-----------AALSKVHAILSK 803

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492
PDZ_signaling 278..375 CDD:238492 18/105 (17%)
PDZ 496..>521 CDD:294084 5/24 (21%)
PDZ_signaling 571..658 CDD:238492 33/100 (33%)
PDZ_signaling 832..913 CDD:238492 16/83 (19%)
PDZ_signaling 973..1055 CDD:238492 21/90 (23%)
Pdzd2NP_001074533.1 PDZ_signaling 335..416 CDD:238492 29/82 (35%)
PDZ_signaling 591..672 CDD:238492 17/112 (15%)
PDZ_signaling 729..813 CDD:238492 21/93 (23%)
PHA03307 1050..>1355 CDD:223039
PHA03247 <1197..1562 CDD:223021
PDZ_signaling 2581..2663 CDD:238492
PDZ 2709..2791 CDD:214570
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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