DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and Pdzd2

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_038959013.1 Gene:Pdzd2 / 65034 RGDID:619958 Length:2818 Species:Rattus norvegicus


Alignment Length:861 Identity:182/861 - (21%)
Similarity:297/861 - (34%) Gaps:259/861 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 LSIDDTMIEHTAFSPD-EVMTIL------DTST-GRGYTQMQIMPAHALARRG---HTTLGSPKY 401
            |::|::.:......|: |:.|:.      ||.| |..:..:.:...:...|||   ..|...|..
  Rat    50 LAVDESTVPPDHSPPEMEICTVYLTKQLGDTETVGLSFGNIPVFGDYGEKRRGGKKRKTHQGPVL 114

  Fly   402 SFSTL---ESRKSSTAGRQRQRFARKSSLPLENPACGTPGSTGGSMGTG-GIHGSSSLGMGLGLC 462
            ....:   |.||:|.||:..:...|...|           |..|.:..| .:.|:|.|       
  Rat   115 DVGCIWVTELRKNSPAGKSGKVRLRDEIL-----------SLNGQLMVGVDVTGASYL------- 161

  Fly   463 RAESFPVLLDCSHGAGIIL----------SETVSGSGGS-------------------------- 491
             ||      .|.:|..|.|          ..|.:|:.|:                          
  Rat   162 -AE------QCWNGGFIYLIMLRRFKQKAHVTYNGNSGNSSEPGETPTLELGDQTSKKGKRTRKF 219

  Fly   492 GAVAIAQI--VPDSVADRSGCIQAGDRIVAINKMYSLDAAAMRQL-------LEGG--SSRNGAS 545
            |.::...|  .|:.....|||..|.|      ....|:..|..:|       ||.|  |.::.|.
  Rat   220 GVISRPSISKTPEDSKSSSGCDTADD------PNSELENGADPELGNGHAFELENGPHSLKDVAG 278

  Fly   546 NGTPANWLELEIEFDMPDAVVPASG----------------------------VFSVKLLRAGKC 582
            .....:..:.|:|..:|....|.|.                            ::.::||:... 
  Rat   279 PHLERSEADSEVELRVPKTEAPLSDSNDKRRFSKTGKTDFQSSDCLAREEVGRIWKMELLKESD- 342

  Fly   583 GLGLSVSG------SSHGGLVISDVKMGSPAHRSGSLRSGDILLAVDQH---PVQHFNVDALLKE 638
            |||:.|||      |.| .:|::.||.|..|||.|.|..||.||.::.|   .:.|....|:|:.
  Rat   343 GLGIQVSGGRGSKRSPH-AIVVTQVKEGGAAHRDGRLSLGDELLVINGHLLVGLSHEEAVAILRS 406

  Fly   639 -EGRSQ----NPSHSSSDFTTLTIKRIVLPDFL----PMSS------------------PIYSNC 676
             .|..|    :...|:.|...||.|.  |||..    .|||                  |.....
  Rat   407 ATGMVQLVVASKESSAEDLLKLTSKS--LPDLTSSVEDMSSWTDNEDQEAAGEDEEGSGPAAVRV 469

  Fly   677 PASGINLGMGMGVSTSTDHDLYSSAYVTAGKYADC-VSLKSRTPQPDYFRVPSMDDASLQSVQLR 740
            ...|......:|.|..:..:|.|.      |..:| ..||||. .....|:.|:::  ...:.:|
  Rat   470 TMPGSEESQDVGSSEESKGNLESP------KQGNCKTKLKSRL-SGGVHRLESVEE--YNELMVR 525

  Fly   741 SGSG-------SNGGNQAANSW---STGVNSRSYVAPPNTQSLTTELPEEEDEQEQMYPGYELNR 795
            :|..       |..|.:.:...   |||.:...::...:|:||:|...|..         :.|.|
  Rat   526 NGDPRIRMLEVSRDGRKHSLPQLLDSTGTSQEYHIVKKSTRSLSTTHVESP---------WRLIR 581

  Fly   796 YASVDCTALPPPMENKVYGSAASSSSKSSGSSLHQIIFTVRLEPKGGLLGITLAGSEDITK---S 857
            .:.:....|                                .:.||..||.::||..|..:   .
  Rat   582 PSVISIIGL--------------------------------YKEKGKGLGFSIAGGRDCIRGQMG 614

  Fly   858 ITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQGMPLSHATSLLQNLGDLVDLKILRSHDLANGS 922
            |.:..:...|.|.::|::..||::|.::...::|:....|....:.:...:.:..:|: .|.:.|
  Rat   615 IFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVRT-KLLSPS 678

  Fly   923 HLPQTQAIYAKVQRRPRSPSANTEA-SKESGSGNANGGGAVNGNSGSG-KPR-VFHVTLYKDKVY 984
            ..|.:...:   ..|..|||.||.: ...:|.|...||.:..|....| |.| |..|||.|:.  
  Rat   679 LTPCSTPTH---MSRSSSPSFNTNSGGTPAGGGQEEGGSSSLGRKAPGPKDRIVMEVTLNKEP-- 738

  Fly   985 DDYGFSVSDGL---------YERGVFINRIRSGGPADMCGLLKPFDRIMQVNEMKTQDFDCCLTV 1040
                 .|..|:         ...|::|:.:..|..|.|...|...|:|::||.:..:.       
  Rat   739 -----RVGLGIGACCLALENSPPGIYIHSLAPGSVAKMESNLSRGDQILEVNSVNVRH------- 791

  Fly  1041 PLIAAAGDKIEMIMQR 1056
                ||..|:..|:.:
  Rat   792 ----AALSKVHAILSK 803

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492
PDZ_signaling 278..375 CDD:238492 8/34 (24%)
PDZ 496..>521 CDD:294084 7/26 (27%)
PDZ_signaling 571..658 CDD:238492 33/100 (33%)
PDZ_signaling 832..913 CDD:238492 16/83 (19%)
PDZ_signaling 973..1055 CDD:238492 21/90 (23%)
Pdzd2XP_038959013.1 PDZ_signaling 335..416 CDD:238492 29/82 (35%)
PDZ_signaling 590..671 CDD:238492 17/112 (15%)
PDZ_signaling 729..813 CDD:238492 21/93 (23%)
PHA03247 <985..1446 CDD:223021
PDZ_signaling 2603..2677 CDD:238492
PDZ_signaling 2731..2813 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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