DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and Pdzk1

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001139473.1 Gene:Pdzk1 / 59020 MGIID:1928901 Length:519 Species:Mus musculus


Alignment Length:569 Identity:112/569 - (19%)
Similarity:203/569 - (35%) Gaps:181/569 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 IVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIKCGGHVSGYTNLTIE---YDVS 267
            ::..:....|..|.| :..|||:||::.|.:..:..|:..::::..|  :..|.|.::   |:.:
Mouse    34 LIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSG--NSVTLLVLDGDSYEKA 95

  Fly   268 VVQSVEFSMGPLLIEI-----ERPMNDKL------GLV-------LCNYTAAVPASGSGSSTPSS 314
            |...|:      |.|:     |..:|||.      |.|       ||....      .|:|...|
Mouse    96 VKNQVD------LKELDQSQREAALNDKKPGPGMNGAVEPCAQPRLCYLVK------EGNSFGFS 148

  Fly   315 GEKIEESAGVFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTGRGYTQ 379
            .:.|:...||::.:|:|..:|.:.|.|: .|.::.::...:|:.  |.:||:..:..|..|    
Mouse   149 LKTIQGKKGVYLTNIMPQGVAMKAGVLA-DDHLIEVNGENVENA--SHEEVVEKVTKSGSR---- 206

  Fly   380 MQIMPAHALARRGHTTLGSPKYSFSTLESRKSSTAGRQRQRFARK-SSLPLENPACGTPGSTGGS 443
              ||                   |..::...:.....|:.:|.|: :||.|              
Mouse   207 --IM-------------------FLLVDKETARCHSEQKTQFKRETASLKL-------------- 236

  Fly   444 MGTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILSETVSGSGGSGAVAIAQIVPDSVADRS 508
                             |.......|:...|:|.|..|.   :|....|.: |..|.|.|.|:.:
Mouse   237 -----------------LPHQPRVVVIKKGSNGYGFYLR---AGPEQKGQI-IKDIEPGSPAEAA 280

  Fly   509 GCIQAGDRIVAIN--KMYSLDAAAMRQLLEGGSSR------------------------------ 541
            | ::..|.:||:|  .:.:||...:.:::..|..:                              
Mouse   281 G-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESIYSLARFSPLLYCQSQEL 344

  Fly   542 -NGASNGTPANWLELEIEFDMPDAVVPASGVFSVKLLRAGKCGLGLSVSGSSHG----------G 595
             ||:....||. :...:|....:....|.| ...||.|       |.....|:|          |
Mouse   345 PNGSVKEGPAP-IPAPLEATGSEPTEDAEG-HKPKLCR-------LLKEDDSYGFHLNAIRGQPG 400

  Fly   596 LVISDVKMGSPAHRSGSLRSGDILLAVDQHPVQHFNVDALLKEEGRSQNPSHSSSDFTTLTI--- 657
            ..:.:|:.|.||.::| |.:.|:::.|:...||....|.:::.       ..||....||.:   
Mouse   401 SFVKEVQQGGPADKAG-LENEDVIIEVNGENVQEEPYDRVVER-------IKSSGKHVTLLVCGK 457

  Fly   658 --------KRIVLPDFLPMSSPIYSNCPASGINLGMGMGVSTSTDHDLY 698
                    |:|  |....|:.|:.:.....|       ..|..::||.:
Mouse   458 MAYSYFQAKKI--PIVSSMAEPLVAGPDEKG-------ETSAESEHDAH 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492 11/47 (23%)
PDZ_signaling 278..375 CDD:238492 27/114 (24%)
PDZ 496..>521 CDD:294084 9/24 (38%)
PDZ_signaling 571..658 CDD:238492 22/107 (21%)
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
Pdzk1NP_001139473.1 PDZ_signaling 7..87 CDD:238492 13/55 (24%)
PDZ 132..212 CDD:214570 23/113 (20%)
PDZ_signaling 242..320 CDD:238492 20/82 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 348..374 5/27 (19%)
PDZ_signaling 376..455 CDD:238492 22/93 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 479..519 4/26 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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