DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and pdzd3b

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001124259.1 Gene:pdzd3b / 566852 ZFINID:ZDB-GENE-081022-151 Length:524 Species:Danio rerio


Alignment Length:497 Identity:114/497 - (22%)
Similarity:171/497 - (34%) Gaps:138/497 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 ERESGCLGLTLRGGAD-YPLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIKC 250
            |||:  .|..||...| ...::..:...||..::| :|.|||||.|:...:  :.|...:     
Zfish    53 ERET--FGFHLRVERDRQGHVIRLLDSPGPAARSG-LKDGDRLLEVNEAFV--ENLEHTE----- 107

  Fly   251 GGHVSGYTNLTIEYDVSVVQSVEFSMGPLLIEIE--------RPMNDKLGLVLCNYTAAVPASGS 307
               |||.....:..|....:.| .|.|..|.|:.        ||.:      ||:...  .|.|.
Zfish   108 ---VSGSQICFLVL
DEKAYEQV-VSEGRDLREMAKAARGEGWRPPH------LCHIRK--DAHGM 160

  Fly   308 G-SSTPSSGEKIEESAGVFIASILPASIADRCGALSVGDQVLSIDDTM---IEHTAFSP-----D 363
            | :..|..|||.:     |..|.:....|:|.| :..||.::.||..|   :.|:|.|.     .
Zfish   161 GFNILPVEGEKRK-----FAVSPVKGGAAERAG-VRKGDHLIWIDGAMASELTHSAISKMVKKCS 219

  Fly   364 EVMTIL--DTSTGRGYT--QMQIMPAHALA-------RRGHTTLGSPKYSFSTLESRKSSTAGRQ 417
            ..||:|  |:.|.:.|.  :|.|:||.|.|       :|.|..:|...|.|  |..::...|||.
Zfish   220 SHMTVLVIDSDTEKSYARRKMPILPAMADAENMPYRPQRLHLVMGPDGYGF--LLRQEKGGAGRT 282

  Fly   418 RQRFARKSSLPLENPACGTPGSTGGSMGTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILS 482
            .........        |:|...||..     .|...|.:     ..||...|   ||      .
Zfish   283 VHMVREVDK--------GSPAELGGVK-----EGEMLLEV-----NGESTDPL---SH------K 320

  Fly   483 ETVSGSGGSG-AVAIAQIVPD--------SVADRSGCIQAGDRIVAINKMYSLDAAAMRQLLEGG 538
            :.||....|| .|.:..:.|.        .::....|:.....:..:.|                
Zfish   321 DVVSNIRQSGQQVTLTTMTPQGYDFYTKLGLSPLLFCVDVPSALPEVKK---------------- 369

  Fly   539 SSRNGASNGTPANWLELEIEFDMPDAVVPASGVFSVK--------LLRAGKCGLGLSVS-GSSHG 594
                             ||......||.|......|:        :|.....|.|..:. .....
Zfish   370 -----------------EIPVTPKPAVPPVEPQEEVQINPNVRRCILERSSAGFGFHLGCVQQKP 417

  Fly   595 GLVISDVKMGSPAHRSGSLRSGDILLAVDQHPVQHFNVDALL 636
            |..||.|..|||...|| |..||:::.|:...|:..:::.::
Zfish   418 GTFISQVAAGSPGQSSG-LFQGDVVVEVNGQNVEKESLEDVI 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492 18/67 (27%)
PDZ_signaling 278..375 CDD:238492 31/115 (27%)
PDZ 496..>521 CDD:294084 2/32 (6%)
PDZ_signaling 571..658 CDD:238492 18/75 (24%)
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
pdzd3bNP_001124259.1 PDZ_signaling 44..118 CDD:238492 21/77 (27%)
PDZ 148..227 CDD:214570 25/92 (27%)
PDZ_signaling 264..336 CDD:238492 23/100 (23%)
PDZ 393..473 CDD:214570 17/67 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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