DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and lnx2b

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_998105.2 Gene:lnx2b / 564464 ZFINID:ZDB-GENE-040426-2500 Length:678 Species:Danio rerio


Alignment Length:864 Identity:168/864 - (19%)
Similarity:254/864 - (29%) Gaps:341/864 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   328 SILP-----ASIADRCGALSVG-DQVL-----SIDDTMIEHTAFSPDEVMTILDTSTGRGY---- 377
            |.||     |.:...||....| |..|     .:||.::.|....|  ::..:||..|..|    
Zfish     7 SSLPTGVTWARVCKECGQCHDGQDSHLFEYQDEVDDELVCHICLQP--LLQPMDTPCGHTYCFQC 69

  Fly   378 -----------------TQMQIMPAHALARRG--------------------------HTTLGSP 399
                             .|:|...|.:|..|.                          |.....|
Zfish    70 LSNFLHDQDFCPVDRQRIQLQQCRASSLLVRNLLDKLAVLCPFRSECELSMQRCELQPHLHNRCP 134

  Fly   400 KY-------------SFSTLESRKS----------STAGRQRQRFARKSSLPLENPACGTPGSTG 441
            .:             |::.|:..||          .|.||..| .:..|...|.|||..      
Zfish   135 AFKRLREEAERKKRPSWNELKGSKSDGDLADAKSAQTIGRTAQ-LSAPSEPGLVNPAFE------ 192

  Fly   442 GSMGTGGIHGSSSLGMGLGLCRAESFPVLL---DCSHGAGIILSETVSGSGGS----GAVAIAQI 499
                    .|.....:...|. ||:..|.|   |.....|:.:      .||.    |.:.|.:|
Zfish   193 --------EGEDDTPLRCSLV-AEATVVELFREDPGEDLGLRI------VGGKDTPLGNIVIQEI 242

  Fly   500 VPDSVADRSGCIQAGDRIVAINKM------YSLDAAAMRQLLEGGSSRNGASNGTPANWLELEI- 557
            |.||:..|.|.:..||.|:.:|.:      :|...|.:||               |.:.|.|.: 
Zfish   243 VRDSLVARDGKLAPGDHILEVNDVSLASISHSRAIAVIRQ---------------PCSRLRLTVM 292

  Fly   558 ----------EFDMPDAVVPASG------------VFSVKLLRAGKCGLGLSVSGSSHGGLVISD 600
                      ....|.|..|...            |..||..|:...|:.| :..|...|:.|.|
Zfish   293 QEKGFKPRPEHHTQPSASPPTQSPSTNQNHGTVIQVTLVKHERSEALGIKL-IRKSEEPGVFILD 356

  Fly   601 VKMGSPAHRSGSLRSGDILLAVDQHPVQHFNVDALLKEEGRSQNPSHSSSDFTTLTIKRIVLPDF 665
            :..|..|.:.|.||:.|.:|.::...::|              ....|::.....:..|:   :|
Zfish   357 LLPGGLAAKDGKLRNNDKVLGINGQDLRH--------------GTPESAAQIIQASEMRV---NF 404

  Fly   666 LPMSSPIYSNCPASGINLGMGMGVSTSTDHDLYSSAYVTAGKYADCVSLKSRTPQPDYFRVPSMD 730
            :.|.....|.....|.:.|                              ..|.|:|.|||..|  
Zfish   405 VVMRLQDVSEEGGEGQSRG------------------------------ARRVPEPQYFRRHS-- 437

  Fly   731 DASLQSVQLRSGSGSNGGNQAANSWSTGVNSRSYVAPPNTQSLTTELPEEEDEQEQMYPGYELNR 795
                                            .|:..|                    ||     
Zfish   438 --------------------------------EYMKEP--------------------PG----- 445

  Fly   796 YASVDCTALPPPMENKVYGSAASSSSKSSGSSLHQIIFTVRLEPKGGLLGITLAGSEDITK--SI 858
                                         |.|..:...|::.||:.. ||||:||..|...  .:
Zfish   446 -----------------------------GFSSQEKTVTLKKEPRQS-LGITIAGGRDCRSRLPV 480

  Fly   859 TISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQGMPLSHATSLLQNLGDLVDLKILRSHDLANGSH 923
            .|:.:...|..|::|.:..||.||     |:.|:.|:|.|     ..:.|.:.            
Zfish   481 YITSVQPVGCLHRDGTVKTGDVLL-----SINGIDLTHLT-----YNEAVTVL------------ 523

  Fly   924 LPQTQAIYAKVQRRPRSPSANTEASKESGSGNANGGGAVNGNSGS------------GKPRVFH- 975
              :||...:.|..|.....|:.| .::..||:......:.|....            |.|...| 
Zfish   524 --KTQTAQSTVTLRVIQTFADDE-EQDGESGSREDMDTMEGPKDDDINWVPLWTRWLGLPSCIHW 585

  Fly   976 ---VTLYKDKVYDDYGFSVSDGLYE-RG---VFINRIRSGGPADMCGLLKPFDRIMQVNEMKTQD 1033
               :.|.|.. .:.:|||:..|..| ||   .||..|..|.||...|.||..|.|:.||.:.|..
Zfish   586 CRDIMLMKTN-SESWGFSIVGGYEESRGQQPFFIKTIVPGTPAYFDGRLKCGDEIVAVNGVTTVG 649

  Fly  1034 FDCCLTVPLIAAAGDKIEM 1052
            .:....:|::....:|:.:
Zfish   650 MNNSSLIPMLKLQKNKVTL 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492
PDZ_signaling 278..375 CDD:238492 15/57 (26%)
PDZ 496..>521 CDD:294084 10/24 (42%)
PDZ_signaling 571..658 CDD:238492 19/86 (22%)
PDZ_signaling 832..913 CDD:238492 24/82 (29%)
PDZ_signaling 973..1055 CDD:238492 26/88 (30%)
lnx2bNP_998105.2 RING 46..82 CDD:214546 6/37 (16%)
PDZ_signaling 210..291 CDD:238492 25/101 (25%)
PDZ_signaling 325..406 CDD:238492 21/98 (21%)
PDZ_signaling 451..537 CDD:238492 28/110 (25%)
PDZ_signaling 587..671 CDD:238492 25/83 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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