DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and ush1c

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_009296312.1 Gene:ush1c / 564412 ZFINID:ZDB-GENE-060312-41 Length:586 Species:Danio rerio


Alignment Length:513 Identity:106/513 - (20%)
Similarity:179/513 - (34%) Gaps:166/513 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 KLAQITVER--ESGCLGLTLRGGADY--PLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKT 240
            ||.::.::|  ..| |||::|||.::  .|.::.:...|.....| ::.||.::|::..|:....
Zfish    84 KLKEVRLDRTHPEG-LGLSVRGGLEFGSGLFISQIVKDGQAGNVG-LQVGDEIVRINGYSISSCI 146

  Fly   241 LAEAQQIIKCGGHVSGYTNLTIEYDVSVVQSVEFSMGPLLIEIERPM----------------ND 289
            ..|...:||        |..|:...|..|     .|.|:....:.|:                |.
Zfish   147 HEEVINLIK--------TKKTVSLKVRHV-----GMIPVKSSSDEPLKWQFVDQFVSESGEKSNS 198

  Fly   290 KLGLVLCN---------YTAAVPASGSGSSTPSSGEKIEESAGVFIASILPASIADRCGALSVGD 345
            ..||....         :.:.|...|.|.|..|...|   ..|::::::.|.|::...| |.|||
Zfish   199 IAGLASIGGNEIKEKKVFLSLVGTKGMGISISSGPTK---KPGIYVSNVKPGSLSAEVG-LQVGD 259

  Fly   346 QVLSIDDTMIEHTAFSPDEVMTILDTS--------TGRG-------YTQMQIMPAHALARRGHTT 395
            |::.::.  :|.|..|..|.:.:|.:|        ||.|       ..::.:...|.|.|:  ..
Zfish   260 QIVEVNG--VEFTNLSHQEAVRVLKSSRSLTITVLTGAGSELFMTDEERLAVEARHELDRQ--EL 320

  Fly   396 LGSPKYSFSTLE----------SRK---SSTAGRQRQRF-------------------------- 421
            :...|.:..|.:          .||   |..|..:.:|:                          
Zfish   321 MHQKKVALETNKIVKEQQEKERQRKMEISQKAAEEEERYRKEMERIEAAEKKHHKEWEDDWGSKE 385

  Fly   422 ARKSSLPLENPACGTP----------GSTGGSM--GTGGIHGSSSLGMGLGLCRAESFPVLLDCS 474
            .:||..|..:|:...|          .||..|.  .||                 |.|...:|..
Zfish   386 KKKSVSPAASPSPPPPTRLAPSPKPKTSTADSYEEETG-----------------EGFQKYVDDF 433

  Fly   475 HGAGIILSETVSG------------------SGG----SGAVAIAQIVPDSVADRSGCIQAGDRI 517
            ....:..:|.::|                  .||    .|.:.::.|.....||:.|.:.:||.|
Zfish   434 DPHSMFTAEQIAGRDVRLLRIKKEGKLDLAIEGGIDSPLGKIVVSSIYEGGAADKHGGVVSGDEI 498

  Fly   518 VAINKMYSLDAAAMRQLLEGGSSRNGASNGTPANWLELEIEFDMP----DAVVPASGV 571
            :|:|.....|..    |.||.:|...|.| :..:|::|.|....|    |.|..|:.|
Zfish   499 MAVNGKILTDVT----LAEGQTSMAQAWN-SGGDWIDLVIAVSPPKEYEDEVPKAASV 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492 18/74 (24%)
PDZ_signaling 278..375 CDD:238492 27/129 (21%)
PDZ 496..>521 CDD:294084 8/24 (33%)
PDZ_signaling 571..658 CDD:238492 1/1 (100%)
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
ush1cXP_009296312.1 harmonin_N 2..80 CDD:259819
PDZ_signaling 85..165 CDD:238492 21/89 (24%)
PDZ_signaling 212..292 CDD:238492 21/85 (25%)
RILP-like 317..>379 CDD:304877 8/63 (13%)
PDZ_signaling 447..534 CDD:238492 21/91 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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