DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and lnx1

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_005160562.1 Gene:lnx1 / 561226 ZFINID:ZDB-GENE-030131-9439 Length:769 Species:Danio rerio


Alignment Length:578 Identity:120/578 - (20%)
Similarity:213/578 - (36%) Gaps:169/578 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 PAIVEIEYSLPECTVSQNSLCVTSKLAQITVERESGC--LGLTLRGGADYPLI---VTHVRPHGP 215
            ||..|: ::||:.    :.|....::..|.:.|...|  |.:::.||.:.||:   :..:...|.
Zfish   277 PAEGEL-FALPQL----HHLIPDGEVTSIKITRADPCEPLAISIVGGNETPLVRILIQDIYREGV 336

  Fly   216 VYKTGRIKPGDRLLRVDNV------------------SLIGKTLAEAQQIIKCGGHVSGYTNLTI 262
            :.:.||:.|||.:|:|:.:                  :|:..|:...|:    ..:.|.:.:.|.
Zfish   337 IARDGRLLPGDMILKVNGIDISNVPHCYAVAALKQPCTLLRLTVLREQR----HRYRSHHHSPTE 397

  Fly   263 EYDVSVVQSVEFSMGPLLIEIERPMNDKLGLVLCNYTAAVPASGSGSSTPSSGEKIEESAGVFIA 327
            .:........:.|:..:|  ::|..:::||:.|.                    :..:..||||.
Zfish   398 AFPAHTATIRDDSLHVVL--VKRAPDEQLGIKLV--------------------RRPDEHGVFIF 440

  Fly   328 SILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTGRGY---TQMQIMPAHALA 389
            .:|...:|.|.|.|.|.|:||:|:...:.:.|  |:....::..|..|.:   ::...:||..:.
Zfish   441 HLLEGGLAARDGRLRVDDRVLAINGHDLRYGA--PEHAALLIQASEDRVHFIVSRQTHIPAPDIL 503

  Fly   390 RRGHTTL-GSPKYSFSTLESRKSSTAGRQRQRFARKSSLPLENPACGTPGSTGGSMGTGGIHGSS 453
            :.....: |.|.||...:|.....:.               :.|||                   
Zfish   504 QEAPWNMEGPPPYSPVDIEHTLLDSC---------------QKPAC------------------- 534

  Fly   454 SLGMGLGLCRAESFPVLLDCSHGA-GIILSETVSGSGGSGAVAIAQIVPDSVADRSGCIQAGDRI 517
                      .|....||...|.: |:.::..:|..|....|.:..:.|:.|..:.|.|:.||.:
Zfish   535 ----------YEKTVTLLKEPHDSLGMTVAGGMSSRGWDLPVYVTNVDPNGVVGQEGSIRKGDIL 589

  Fly   518 VAINKMYSLDAAAMRQLLEGGSSRNGAS-------NGTPANWLELEI--EFDMPDAVVPAS-GVF 572
            :.:|   .:|...:.:.....:.:|.:|       ...|.|...|:.  ....|.|:.|:| |  
Zfish   590 LNVN---GVDLTGVTRSEAVANLKNTSSPVVLQVLEMRPPNESSLDCMPPLHSPCALSPSSPG-- 649

  Fly   573 SVKL----------------------------LRAGKCG-LGLSVSG-----SSHGGLVISDVKM 603
            .|||                            ||....| ||.|:.|     :.:....|..:..
Zfish   650 DVKLPPPNDDYAPLWVSWLQLPRHLYCCKDIVLRRSTSGSLGFSIVGGQEELNCNQSFFIRSIVE 714

  Fly   604 GSPAHRSGSLRSGDILLAVDQHP---VQHFNVDALLKE-EGRSQNPSHSSSDFTTLTI 657
            |:||:..|.:|.|||||.|:...   :.|..:..|||| .||           .||||
Zfish   715 GTPAYNDGRIRCGDILLEVNGKSTWGMTHTALVRLLKELRGR-----------ITLTI 761

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492 19/93 (20%)
PDZ_signaling 278..375 CDD:238492 22/96 (23%)
PDZ 496..>521 CDD:294084 6/24 (25%)
PDZ_signaling 571..658 CDD:238492 33/125 (26%)
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
lnx1XP_005160562.1 RING 57..93 CDD:214546
PDZ_signaling 297..381 CDD:238492 18/83 (22%)
PDZ_signaling 411..491 CDD:238492 23/103 (22%)
PDZ_signaling 536..621 CDD:238492 18/87 (21%)
DegQ <548..621 CDD:223343 14/75 (19%)
PDZ_signaling 678..762 CDD:238492 30/95 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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