DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and ptpn13

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_005161523.1 Gene:ptpn13 / 560883 ZFINID:ZDB-GENE-070410-72 Length:2480 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492
PDZ_signaling 278..375 CDD:238492
PDZ 496..>521 CDD:294084
PDZ_signaling 571..658 CDD:238492
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
ptpn13XP_005161523.1 PKc_like 3..180 CDD:304357
B41 560..764 CDD:214604
FERM_N 560..622 CDD:286467
FERM_M 651..764 CDD:278785
FERM_C_PTPH13 760..860 CDD:270008
PDZ_signaling 1058..1142 CDD:238492
PTN13_u3 1144..1321 CDD:293207
PDZ 1320..1411 CDD:214570
PDZ 1452..1542 CDD:214570
PDZ_signaling 1722..1797 CDD:238492
PDZ_signaling 1822..1893 CDD:238492
PDZ_signaling 1952..2026 CDD:238492
PTPc 2216..2467 CDD:214550
PTPc 2240..2467 CDD:238006
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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