DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and tamalin

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001035013.1 Gene:tamalin / 558950 ZFINID:ZDB-GENE-060312-30 Length:382 Species:Danio rerio


Alignment Length:514 Identity:94/514 - (18%)
Similarity:151/514 - (29%) Gaps:221/514 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   309 SSTPSSGEKIEESAGVFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTST 373
            ||.|.||....:|..::..|    |.:|.||.::.|                             
Zfish    14 SSDPDSGSLCHDSGDIYFTS----SKSDSCGIVNRG----------------------------- 45

  Fly   374 GRGYTQMQIMPAHALARRGHTTLGSPKYSFSTLESRKSSTAGRQRQRFARKSSLP------LENP 432
                      |:::.....:.||.   ||..||........|.|:.:...:|..|      ||..
Zfish    46 ----------PSNSTEVYNYKTLA---YSGGTLPRNFKKNGGLQKWKPLAQSPEPQRKTVILEKK 97

  Fly   433 ACGTPGSTGGSMGTGGIHGSS--SLGMGLGLCRA-ESFPVLLDCSHGAGIILSETVSGSG----- 489
               ...|.|..:.|.|:|..|  |:.|...:|:. |..|.||     ||:.:.:|::...     
Zfish    98 ---EEESFGFEIQTYGLHHQSENSVEMCTFVCKVHEDSPALL-----AGLKVGDTIASVNDTSVD 154

  Fly   490 GSGAVAIAQIVPDSVADRSGCIQAGDRIVAINKMYS-------LDAAA--MRQLLEGGSSRNGAS 545
            |.....|.|::..|          |:.| .:..:||       |:|..  ::|.|.         
Zfish   155 GFRHKEIVQLIKSS----------GNNI-RLETVYSDSIRKAELEARLQYLKQTLH--------- 199

  Fly   546 NGTPANWLELEIEFDMPDAVVPASGVFSVKLLRAGKCGLGLSVSGSSHGGLVISDVKM------- 603
                ..|.|..........:|                          | |:|:|||.|       
Zfish   200 ----EKWDEYRSLMVQEQRLV--------------------------H-GIVMSDVAMYESLESA 233

  Fly   604 ------GSPAHRSGSLRSGDILLAVDQHPVQHFNVDALLKEEGRSQNPSHSSSDFTTLTIKRIVL 662
                  |:|:  ..:||                   ||...:..|.:.||.|:....        
Zfish   234 GVYGSLGAPS--PAALR-------------------ALRGTDSTSSSVSHLSAATAE-------- 269

  Fly   663 PDFLPMSSPIYSNCPASGINLGMGMGVSTSTDHDLYSSAYVTAGKYADCVSLKSRTPQPDYFRVP 727
                  ..|:|..|            :..:|.:|.              :..|....:|...|..
Zfish   270 ------DDPLYQTC------------IFNNTSNDQ--------------IHAKQENTRPRLIRPA 302

  Fly   728 SMDDASLQSVQLRSGSGSNGGNQAANSWSTGVNSRSYVAPPNTQS--LTTELPEEEDEQ 784
            |....:.::...||.|                 :|||:.||::.|  .::.:|..|.:|
Zfish   303 SELFTTAKTSLTRSAS-----------------TRSYLRPPSSSSSASSSAVPNGEKQQ 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492
PDZ_signaling 278..375 CDD:238492 12/65 (18%)
PDZ 496..>521 CDD:294084 5/24 (21%)
PDZ_signaling 571..658 CDD:238492 17/99 (17%)
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
tamalinNP_001035013.1 PDZ_signaling 90..175 CDD:238492 24/103 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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