DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and Ptpn3

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_006538160.1 Gene:Ptpn3 / 545622 MGIID:105307 Length:935 Species:Mus musculus


Alignment Length:473 Identity:98/473 - (20%)
Similarity:149/473 - (31%) Gaps:161/473 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KKPIGGCV--PGKSAALKQDQQQQQQQQQESHNNSFNGHHHPP-TDTALAPMLSVDRAMSPAQSE 68
            ||.|||.|  |....:|..::.:.:.....|          || |....:|.|. .....|..|.
Mouse   364 KKVIGGMVWNPVMRRSLSVERLETKSLPSRS----------PPITPNWRSPRLR-HEIRKPRHSS 417

  Fly    69 DSGLAPERGTTYATIT-----------LPR--------------------NALHLAITFAERNDL 102
            ...||.|  .||.|.|           .|:                    |.....:|  :::..
Mouse   418 ADNLANE--MTYITETEDVFYTYKGPLSPKDSDSEVSQNHSPHRESLSENNPAQSCLT--QKSSS 478

  Fly   103 SYPP---VVGSLNPVGHAADFLAPGDRLHQIDGISTIGLSNQKVMNMLCAGGSDACPAIVEIEYS 164
            |..|   ..||.:|.|....||   :..|::    |.|...:......|....|....:|     
Mouse   479 SVSPSSNAPGSCSPDGVDQRFL---EDYHKV----TKGGFVEDASQYYCDKSDDGDGYLV----- 531

  Fly   165 LPECTVSQNSLCVTSKLAQITVERESGCLGLTLRGGAD--YPLIVTHVRPHGPVYK-TGRIKPGD 226
                            |.:||.: |.|..|..|:||.|  .||:|:.:.|..|... ..::..||
Mouse   532 ----------------LIRITPD-EEGRFGFNLKGGVDQKMPLVVSRINPESPADTCMPKLNEGD 579

  Fly   227 RLLRVDNVSLIGKTLAEAQQIIKCG--GH------------VSGYTNLTIEYDVSVV-------- 269
            :::.::...:...|..:....||..  .|            |.....:..|.::|.:        
Mouse   580 QIVLINGRDISEHTHDQVVMFIKASRESHSRELALVIRRKAVRSLAEIRSEDELSQLFPEAMFPA 644

  Fly   270 -----QSVEFSM---------GPLLIEIERPMNDKLGL------------------VLCNYTAAV 302
                 .|:|.||         |.:||:.|:....|.||                  ||...|..|
Mouse   645 CPEGGDSLEGSMELLKKGLESGTVLIQFEQLYRKKPGLAVSFAKLPQNLDKNRYKDVLPYDTTRV 709

  Fly   303 PASGSGSSTPSSGEKIEESA----GVFIASILPASIADRCGAL--SVGDQVLSIDDTMIEHTAFS 361
            ...|:.....:|...:|..|    ..:||:..|  :.:.|...  .|.||.||:           
Mouse   710 LLQGNEDYINASYVNMEMPAANLVNKYIATQGP--LPNTCAQFWQVVWDQKLSL----------- 761

  Fly   362 PDEVMTILDTSTGRGYTQ 379
                :.:|.|.|.||.|:
Mouse   762 ----VVMLTTLTERGRTK 775

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 16/98 (16%)
PDZ_signaling 183..254 CDD:238492 20/87 (23%)
PDZ_signaling 278..375 CDD:238492 26/120 (22%)
PDZ 496..>521 CDD:294084
PDZ_signaling 571..658 CDD:238492
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
Ptpn3XP_006538160.1 B41 53..244 CDD:214604
FERM_C_PTPN4_PTPN3_like 238..331 CDD:270010
PDZ_signaling 530..617 CDD:238492 22/108 (20%)
PTPc-N3 653..926 CDD:350448 33/140 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0792
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.