DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and Pdzd3

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001178925.1 Gene:Pdzd3 / 500986 RGDID:1559807 Length:498 Species:Rattus norvegicus


Alignment Length:605 Identity:120/605 - (19%)
Similarity:205/605 - (33%) Gaps:212/605 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 DTALA-------PMLSVDR-AMSPAQSEDSG------------LAPERGTTYATITLPRNALHLA 93
            ||||.       |.|.:|. .:|.|:.:|..            |:.|...::        ..||.
  Rat     9 DTALLTLKFKFNPRLGIDNPVLSLAEDQDQSDPWNLHRPRFCLLSKEEEKSF--------GFHLQ 65

  Fly    94 ITFAERNDLSYPPVVGSLNPVGHAA--DFLAPGDRLHQIDG-----------ISTIGLSNQKVMN 145
            ....:.:.     ||..::| |.:|  ..|..|||:..::.           :..|..|..:|:.
  Rat    66 QQLGKADH-----VVCRVDP-GSSAQRQGLREGDRILAVNNNIVEHEDYAVVVRYIRASGPRVLL 124

  Fly   146 MLCA----------GGSDA--CPAIVEIEYSLPECTVSQNSLCVTSKLAQITVERESGCLGLTLR 198
            .:.|          .|::|  ||.:..               .|..:|..:.  ::.|..|.::.
  Rat   125 TVLAQHVYDVTRAQQGNEAFPCPTLAS---------------GVRPRLCHVV--KDEGGFGFSVT 172

  Fly   199 GGADYPLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEA-QQIIKCGGHVSGYTNLTI 262
            .||..|..:  |...|...:...:.||.|||.|:.:.:...|..:. :::.:.|..|:    |.:
  Rat   173 HGARGPFWL--VLSAGGAAERAGVPPGARLLEVNGICVEKFTYNQLNRKLCQSGDRVT----LLV 231

  Fly   263 EYDVSVVQSVEFSMGPLLIEIERPMNDKLGLVLCNYTAAVPASGSGSSTPSS------------- 314
                         .||   |:|...: :||:.|     |.|.: .|.:.|:.             
  Rat   232 -------------AGP---EVEEQCH-QLGMPL-----AAPLA-EGWALPAKPRCLNIEKGPQGF 273

  Fly   315 GEKIEES------AGVFIASILPASIADRCGALSVGDQVLSI----------DDTMIEHTAFSPD 363
            |..:.|.      .|.|:..:.|...||:.| :..||:::::          ::|:....|....
  Rat   274 GFLLREEKGPDGRLGQFLWEVDPGLPADKAG-MKAGDRLVAVAGESMDGLGHEETVSRIRAQGSC 337

  Fly   364 EVMTILDTSTGRGYTQMQIMPAHALARRGHTTLGSPKYSFSTLESRKSSTAGRQRQRFARKSSLP 428
            ..:.::|....|.::.:::.|                  ...||:.:.:.|     ..|....||
  Rat   338 VSLVVVDPEADRFFSMVRLSP------------------LLFLENTEIAAA-----PLAETKDLP 379

  Fly   429 LENPACGTPGSTGGSM------GTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILSETVSG 487
            :|:..  .|....||.      |.||       |.|..|....|.|.|.                
  Rat   380 VEDTV--EPSGLAGSRQCFLYPGPGG-------GYGFRLRCVASGPCLF---------------- 419

  Fly   488 SGGSGAVAIAQIVPDSVADRSGCIQAGDRIVAINKM---YSLDAAAMRQLLEGG-------SSRN 542
                    |:|:.|...|.|:| :|.||.|:.:|..   ...|...::||.|..       :.||
  Rat   420 --------ISQVTPGGSAARAG-LQMGDAILEVNGCPVGGDSDLDTLQQLAEAEPPLRLKLAPRN 475

  Fly   543 GASNGTPANWLELEIEFDMP 562
              |.|:.| |:.||...|.|
  Rat   476 --SQGSEA-WISLESGEDWP 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 14/77 (18%)
PDZ_signaling 183..254 CDD:238492 15/71 (21%)
PDZ_signaling 278..375 CDD:238492 23/125 (18%)
PDZ 496..>521 CDD:294084 10/24 (42%)
PDZ_signaling 571..658 CDD:238492
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
Pdzd3NP_001178925.1 PDZ_signaling 47..127 CDD:238492 16/93 (17%)
PDZ_signaling 155..232 CDD:238492 18/97 (19%)
PDZ 260..345 CDD:214570 12/85 (14%)
PDZ_signaling 407..472 CDD:238492 19/89 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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