DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and Ptpn13

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_038948202.1 Gene:Ptpn13 / 498331 RGDID:1563360 Length:2465 Species:Rattus norvegicus


Alignment Length:1159 Identity:241/1159 - (20%)
Similarity:384/1159 - (33%) Gaps:374/1159 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 QQQQQQQESHNNSFNGHHHPPTDTALAPMLSVDRAMSPAQSE--DSGLAPERGTTYATITLPRNA 89
            |..|...:..|:..:....|             |.||.:..:  .:.|.|.|.......:||:  
  Rat   937 QPLQNSSKEKNDKASWEEKP-------------RGMSKSYHDLSQASLCPHRKQVINMESLPQ-- 986

  Fly    90 LHLAITFAERNDLSYPPVVGS-LNPVGHA-ADFLAPGDRLHQIDGISTIGLSNQKVMNMLCAGGS 152
                 .|||        :||. |.|:..: .:.||...:|:....::::..|.::..:...:...
  Rat   987 -----AFAE--------LVGKPLYPMARSDTESLAGLPQLNNSKSVASLNRSPERRSHESDSSVE 1038

  Fly   153 DACPAIVEIEYSLPECTVSQNSL-------------CVTSKLAQITV-----ERESGCLGLTLRG 199
            |...|.| :..|||....|.:.:             .|:|...:||:     :.:.| ||..:.|
  Rat  1039 DPGQAYV-VGMSLPSSGKSSSQVPFKDNDSLHKRWSTVSSPEREITLVNLKKDLKHG-LGFQIVG 1101

  Fly   200 GA-----DYPLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIKCGGHVSGYTN 259
            |.     |..:.::.|.|.||....|.:||||||:.|::|||.|.:...|..|::          
  Rat  1102 GGKMGRLDLGVFISAVTPGGPADLDGCLKPGDRLISVNSVSLEGVSHHAAVDILQ---------- 1156

  Fly   260 LTIEYDVSVVQS-------------VEFSMGPLLIEIERPMNDKLGLVLCNYTAAVPASGSGSST 311
             ....||::|.|             |.|:.|                 :.|||....:....:..
  Rat  1157 -NAPEDVTLVISQPKEKPTKVPSTPVHFANG-----------------MKNYTKKPSSMQDSAMD 1203

  Fly   312 PSSGEKIEESAGVFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTG-R 375
            ||..:......    ...:|.|.......|..|.  ||..|:..|..:.|...|.....:..| |
  Rat  1204 PSEDQPWPRGP----LRHVPESPFGLSSGLREGS--LSSQDSRTESASLSQSHVNGFFTSHLGDR 1262

  Fly   376 GYTQMQIMPAHAL---------------------ARRGHT------------TLGSPKYSFSTLE 407
            |:.:    |.|:.                     |||..|            .:..|.||     
  Rat  1263 GWQE----PQHSSPSPPVTSKITEKTFSDSYRSPARRQGTCDVTELPGCADSDIDDPTYS----- 1318

  Fly   408 SRKSSTAGRQRQRFARKSS-------LPLENPACGTP-----GSTGGSMGTGGIHGSSSLGMGLG 460
            |.:...|.:|......|:|       .|..:|..|..     ..|.||:|.              
  Rat  1319 SSQDRQAPKQEPSSPLKASDKMSFAAFPGPSPEPGDAFEVELAKTDGSLGI-------------- 1369

  Fly   461 LCRAESFPVLLDCSHGAGIILSETVSGSGGSGAVAIAQIVPDSVADRSGCIQAGDRIVAINKMYS 525
                 |..||.|         ...|:.|...|.:.:..::|:..|:..|.|..|||::|:|.: |
  Rat  1370 -----SVTVLFD---------KGGVNTSVRHGGIYVKAVIPNGAAETDGRIHKGDRVLAVNGV-S 1419

  Fly   526 LDAAAMRQ--------------LLEGGSS-----RNGASNGTPANWLELEIEFDMPD-------- 563
            |:.|..:|              |||.|.|     |:.||...|..  :.:.:...|:        
  Rat  1420 LEGATHKQAVETLRNTGQVVHLLLEKGQSPTSRERDPASPRCPTP--DQDAQSQAPEKMEKQTAH 1482

  Fly   564 ----AVVPASGVFSVKLLRAGKCGLGLSVSGSSH------GGLVISDVKM--GSPAHRSGSLRSG 616
                :.|.....|.|||.: ...|||.|.|...:      .|.::...|:  |.||..||.:..|
  Rat  1483 VKDYSFVTEDNTFEVKLFK-NSSGLGFSFSREDNLTPELINGSIVRVKKLFPGQPAAESGKINVG 1546

  Fly   617 DILLAVDQHPVQHFNVDALLKEEGRSQNPSHSSSDFTTLTIKRIVLPDFLPMSSPIYSNC-PASG 680
            |::|.|:..|:           :|.||....|:...|...:..::              | ||.|
  Rat  1547 DVILKVNGAPL-----------KGLSQQDVISALRGTAPEVSLLL--------------CRPAPG 1586

  Fly   681 INLGMGMGVSTSTDHDLYSSAYVTAGKYADCVSLKSRT--PQPDYFRVPSMDDASLQSVQLRSGS 743
            :.    ..|:|:....|:|.|:         ..|.||.  .||           |..||:..:.|
  Rat  1587 VL----PEVNTALLTPLHSPAH---------AFLNSRKEHSQP-----------SPLSVEQCASS 1627

  Fly   744 GSNGGNQAANSWSTGVNSRSYVAPPNTQSLTTELPEEEDEQEQMYPGYELNRYASVDCTALPPPM 808
            ..||        .:|.:.|....|...:|.:......|:|              ||...|   .|
  Rat  1628 DENG--------LSGQSKRQCKPPSRRESYSDHSDSGEEE--------------SVRAAA---KM 1667

  Fly   809 ENKVYGSA-ASSSSKSSGSSLHQIIFTVRLEPKGGLLGITLAGSEDITKSITISGLVEGGIAHKN 872
            .|.:..|| |..:.:|.|.....:.:..|..|     |...:.|..:...:.:|   .|.|....
  Rat  1668 PNVIPLSAFAPEALRSQGEPASTMFYLPRKIP-----GKPESESSRLPHPLDVS---PGQIRQPP 1724

  Fly   873 GQIHVGDQLLAIDEHSVQGMPLSHATSLLQNLGDLVDLKILRSHDLANGSHLPQTQAIYAKVQRR 937
            .:....|.         .|..|:|..|.|....::..||    :||  |:||             
  Rat  1725 AECAPSDS---------PGKHLTHLASQLHKEENMTALK----NDL--GNHL------------- 1761

  Fly   938 PRSPSANTEASKESGSGNANGGGAVNGNSGSGKPRVFHVTLYKDKVYDDYGFSVSDGLYERGVFI 1002
                 .::|...|                       ..:||.|.: ....||:|:.|....|.::
  Rat  1762 -----EDSELEVE-----------------------LLITLVKSE-KGSLGFTVTKGSQSIGCYV 1797

  Fly  1003 NRIRSGGPADMCGLLKPFDRIMQVNEMKTQDFDCCLTVPLIAAAGDKIEMIMQR 1056
            :.:.. .||...|.|:|.||:::||:....:......|.|:.||...:.:::.|
  Rat  1798 HDVIQ-DPAKGDGRLRPGDRLVKVNDADVTNMTHTDAVNLLRAAPKTVRLVIGR 1850

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 13/66 (20%)
PDZ_signaling 183..254 CDD:238492 26/80 (33%)
PDZ_signaling 278..375 CDD:238492 16/97 (16%)
PDZ 496..>521 CDD:294084 8/24 (33%)
PDZ_signaling 571..658 CDD:238492 26/94 (28%)
PDZ_signaling 832..913 CDD:238492 15/80 (19%)
PDZ_signaling 973..1055 CDD:238492 21/81 (26%)
Ptpn13XP_038948202.1 KIND 3..190 CDD:214801
FERM_F1_PTPN13 564..659 CDD:340715
B41 566..774 CDD:214604
PH-like 770..870 CDD:418428
PDZ_signaling 1082..1166 CDD:238492 28/95 (29%)
PTN13_u3 1168..1356 CDD:406898 38/219 (17%)
PDZ_signaling 1356..1444 CDD:238492 25/116 (22%)
PDZ 1493..1583 CDD:214570 27/115 (23%)
PDZ_signaling 1769..1848 CDD:238492 22/103 (21%)
PDZ_signaling 1873..1945 CDD:238492
PTPc-N13 2216..2449 CDD:350445
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0792
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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