DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and scrib

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001163746.1 Gene:scrib / 44448 FlyBaseID:FBgn0263289 Length:2585 Species:Drosophila melanogaster


Alignment Length:1146 Identity:222/1146 - (19%)
Similarity:371/1146 - (32%) Gaps:402/1146 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IGGCVPGKSAALKQDQQQQQQQ-------QQESHNNSFNGHHHPP-------------------T 48
            :...|.|.......|:|:.:.:       |.|..::.|  :..||                   |
  Fly   580 LAATVGGSDEVQDDDEQEDEFESDRRVGFQVEGEDDDF--YKRPPKLHRRDTPHHLKNKRVQHLT 642

  Fly    49 DTALAPMLSVDRAMSPAQSEDSGLAPERGTTYATITLP-RNALHLAITFAERNDLSYPPVVGSLN 112
            |...:.:|    |.:.|..|.:...|:...: ..:|.| .....|.:...::......|...||:
  Fly   643 DKQASEIL----ANALASQERNDTTPQHSLS-GKVTSPIEEEEQLEVEQEQQQQQQQHPFDSSLS 702

  Fly   113 PV--GHAADFLAPGDRLHQIDGISTIGLSNQKVMNMLCAGGSDACPAIVEIEYSLPECTVSQNSL 175
            |:  |..|:.....|.|   ||::.:.|.                      :|            
  Fly   703 PISAGKTAEASTDPDNL---DGVTELRLE----------------------QY------------ 730

  Fly   176 CVTSKLAQITVERESGCLGLTLRGGA--------DYPLIVTHVRPHGPVYKTGRIKPGDRLLRVD 232
                   :|.:||.:..|||::.||.        |..:.::.|...||....| :|.||::::|:
  Fly   731 -------EIHIERTAAGLGLSIAGGKGSTPFKGDDDGIFISRVTEAGPADLAG-LKVGDKVIKVN 787

  Fly   233 NVSLIGKTLAEAQQIIKCGGHVSGYTNLTIEYDVSVVQSVEFSMGPLLIEIERPMNDKLGLVLCN 297
            .:.::.....:|.|::|..|.|                        |::.::|.:...:|..:  
  Fly   788 GIVVVDADHYQAVQVLKACGAV------------------------LVLVVQREVTRLIGHPV-- 826

  Fly   298 YTAAVPASGSGSSTPSSGEKIEESAGVFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAFSP 362
                       .|...|..:|.......:|...||:                    .|.|..:.|
  Fly   827 -----------FSEDGSVSQISVETRPLVADAPPAA--------------------SISHERYIP 860

  Fly   363 DEVMTILDTSTGRGYTQMQIMPAHALARRGHTTLGSPKYSFSTLESRKSSTAGRQRQRFARKSSL 427
            ..:..:   ...:...|.|..|...:|         |.:|:|             ...||..::.
  Fly   861 APIEIV---PQQQHLQQQQQQPIQQVA---------PTHSYS-------------GNVFATPTAA 900

  Fly   428 PLENPACGTPGSTGGSMGTG--------GIHGS---SSLGMGLGLCRA---ESFPVLLDCSHGAG 478
            ....||  ...:..|.:..|        .:|.:   ..:|.|||...|   .|.|...||.   |
  Fly   901 QTVQPA--VSAAPNGLLLNGREAPLSYIQLHTTLIRDQIGQGLGFSIAGGKGSPPFKDDCD---G 960

  Fly   479 IILSETVSGSGGSGAVAIAQIVPDSVADRSGCIQAGDRIVAINKMYSLDA---AAMRQLLEGGSS 540
            |.:|....|               .:|.|.|.|..|||::|||.....:|   ||:..|.|    
  Fly   961 IFISRITEG---------------GLAYRDGKIMVGDRVMAINGNDMTEAHHDAAVACLTE---- 1006

  Fly   541 RNGASNGTPANWLELEIEFDMPDAVVPASGVFSVKLLRAGKCGLGLSVSGSSHGGLVISDVKMGS 605
                    |..::.|.::.:....:.|.:...|..:|.:      ||.||          .....
  Fly  1007 --------PQRFVRLVLQREYRGPLEPPTSPRSPAVLNS------LSPSG----------YLANR 1047

  Fly   606 PAHRSGSLRSGDILLAVDQ----------HPVQHFNVDALLKEEGRSQNPSHSSSDFTTLTIKRI 660
            ||:.|.|      ::.|:|          .|.....|.|.:.....:. ||..::.|.|.....|
  Fly  1048 PANFSRS------VVEVEQPYKYNTLATTTPTPKPTVPASISNNNNTL-PSSKTNGFATAAAATI 1105

  Fly   661 VLPDFLPMSSPIYSNCPASGINLGMGMGVSTSTDHDLYSSAYVTAGKYADCVSLKSRTPQPDYFR 725
            ......|:.:|..:|....| :..:|.|.:||.|                     |...||...|
  Fly  1106 DSSTGQPVPAPRRTNSVPMG-DGDIGAGSTTSGD---------------------SGEAQPSSLR 1148

  Fly   726 VPSMDDASLQSVQLRSGSGSNGGNQA---ANSWSTGVNSRSYVAPPN---TQSLTTELPEEEDEQ 784
            ..:.||.                 ||   |:..|.|...:.:||.||   ..::|..:.:.:.:.
  Fly  1149 PLTSDDF-----------------QAMIPAHFLSGGSQHQVHVARPNEVGVSAVTVNVNKPQPDL 1196

  Fly   785 EQMYPGYELNRYASVDCTALPPPMENKVYGSAASSSSKSSGSSLHQIIFT------------VRL 837
             .|:|             |.|..:     |....:.:||:.:.......|            |.|
  Fly  1197 -PMFP-------------AAPTEL-----GRVTETITKSTFTETVMTRITDNQLAEPLISEEVVL 1242

  Fly   838 EPKGGLLGITLAGSEDIT--------KSITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQGMPL 894
            ....|.||.::.|..|.:        ..|.||.:|.||||.|.|::.:||::|.::|..|.  ..
  Fly  1243 PKNQGSLGFSIIGGTDHSCVPFGTREPGIFISHIVPGGIASKCGKLRMGDRILKVNEADVS--KA 1305

  Fly   895 SHATSLLQNL--GDLVDLKILRSHDLANGSHLPQTQAIYAKVQRRPRSPSANTEASKESGSGNAN 957
            :|..::|:.|  ||  ::|:...||                    |..|... |.......|...
  Fly  1306 THQDAVLELLKPGD--EIKLTIQHD--------------------PLPPGFQ-EVLLSKAEGERL 1347

  Fly   958 G---GGAVNGNSGS-GKPRVFHVTLYKDKVYDDYGFSVSDGLYERGVFINRIRSGGPADMCGLLK 1018
            |   .|.:||..|: ..|.                        :.|||:::|.|.|.|...|.||
  Fly  1348 GMHIKGGLNGQRGNPADPS------------------------DEGVFVSKINSVGAARRDGRLK 1388

  Fly  1019 PFDRIMQVN-----EMKTQDFDCCLTVPLIAAAGDKIEMIM 1054
            ...|:::||     ....||     .|.::..||::|::::
  Fly  1389 VGMRLLEVNGHSLLGASHQD-----AVNVLRNAGNEIQLVV 1424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 14/67 (21%)
PDZ_signaling 183..254 CDD:238492 21/78 (27%)
PDZ_signaling 278..375 CDD:238492 12/96 (13%)
PDZ 496..>521 CDD:294084 8/24 (33%)
PDZ_signaling 571..658 CDD:238492 19/96 (20%)
PDZ_signaling 832..913 CDD:238492 29/102 (28%)
PDZ_signaling 973..1055 CDD:238492 19/87 (22%)
scribNP_001163746.1 LRR_RI 13..283 CDD:238064
leucine-rich repeat 18..38 CDD:275380
LRR_8 37..95 CDD:290566
leucine-rich repeat 39..61 CDD:275380
leucine-rich repeat 62..84 CDD:275380
LRR_8 84..138 CDD:290566
leucine-rich repeat 85..107 CDD:275380
leucine-rich repeat 108..130 CDD:275380
LRR_8 129..187 CDD:290566
leucine-rich repeat 131..153 CDD:275380
leucine-rich repeat 154..176 CDD:275380
leucine-rich repeat 177..199 CDD:275380
LRR_8 198..256 CDD:290566
leucine-rich repeat 200..222 CDD:275380
leucine-rich repeat 223..245 CDD:275380
LRR_8 267..325 CDD:290566
leucine-rich repeat 269..289 CDD:275380
leucine-rich repeat 292..314 CDD:275380
leucine-rich repeat 315..337 CDD:275380
LRR_4 337..375 CDD:289563
leucine-rich repeat 361..382 CDD:275380
PDZ 728..816 CDD:214570 24/153 (16%)
PDZ_signaling 931..1016 CDD:238492 30/114 (26%)
PDZ 1239..1329 CDD:214570 30/113 (27%)
PDZ_signaling 1336..1425 CDD:238492 27/118 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23119
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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