DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and a

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001014543.1 Gene:a / 43852 FlyBaseID:FBgn0000008 Length:1329 Species:Drosophila melanogaster


Alignment Length:1138 Identity:215/1138 - (18%)
Similarity:343/1138 - (30%) Gaps:434/1138 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SKKPIGG--------------CVPGKSAALKQDQQQQQQQQQESHNNSFNGHHHPPTDTALAPML 56
            |..|.||              |..|....:||..||||||||...:                   
  Fly   386 SASPTGGHQNSSGSTTSTLKKCKSGPIETIKQRHQQQQQQQQSVQD------------------- 431

  Fly    57 SVDRAMSPAQSEDSGLAPERGTTYATITLPRNALHLAITFAERNDLSYPPVVGSLNPVGHAADFL 121
                 :...||:.:...|..  .:.....|:.||.   .|..|                      
  Fly   432 -----VGTGQSQSAQSTPTH--QFQAAARPQKALK---NFFHR---------------------- 464

  Fly   122 APGDRLHQIDGISTIGLSNQKVMNMLCA--GGSDACPAIVEIEYSLPECTVSQNSLCVTSKLAQI 184
                       |.:.|:.|.:..|:|.|  ....|.||...:..|.....:|.:|.         
  Fly   465 -----------IGSTGMLNHRSHNLLKASEAAQQATPAATTLYRSSSTSQLSSSSY--------- 509

  Fly   185 TVERESGCLGLTLRGGADYPLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIK 249
             |:.:....||.|:                      |.:...||.|:  .||...:..:..::..
  Fly   510 -VKCDDPTEGLNLQ----------------------REQREQRLPRI--ASLKSSSCDDIAKVSS 549

  Fly   250 C------GGHVSGYTNLTIEYDVSVVQSVEFSMGPLLIEIERPMNDKLGLVLCNYTAAVPASGSG 308
            |      .|..:|                  |:|                     :....|:..|
  Fly   550 CLTASTSSGSAAG------------------SLG---------------------SPPSSAAAGG 575

  Fly   309 SSTPSSGEKIEESAGVFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTST 373
            ..|.:||:......|.|..:.|.:.::           ||             |:|     :...
  Fly   576 GGTANSGQHDPSRRGAFPYAFLRSRLS-----------VL-------------PEE-----NHGN 611

  Fly   374 GRGYTQMQIMPAHALARRGHTTL-------------GSPKYSFSTLESRKSSTAGRQRQRFARKS 425
            ..|:.:.||.......::....|             .||:.:.....||..|...:..:...::.
  Fly   612 VPGHLKQQIQRQREQHQQHQRDLLQQEQTSSPLPQRRSPEQAMLNNVSRNDSITSKDWEPLYQRL 676

  Fly   426 SLPLENPACG---TPGSTGGSMG-----TGG-----------------IHGSSSLGMGLG----- 460
            |..|.:...|   ..|:||..:|     :||                 :..|..:|||:|     
  Fly   677 SSCLSSNESGYDSDGGATGARLGNNLSISGGDTESIASGTLKRNSLISLSSSEGVGMGMGMSLGL 741

  Fly   461 ---------LCRAESFPVLL-----------------------DCSHG-AGIILS-ETVSGSGGS 491
                     :|.|   ||.|                       .|... .||:|| :||..:...
  Fly   742 GAPSTRNSSICSA---PVSLGGYNYDYETETIRRRFRQVKLERKCQEDYIGIVLSPKTVMTNSNE 803

  Fly   492 G--AVAIAQIVPDSVADRSGCIQAGDRIVAINKMY---SLDAAAMRQLLEGGSSRNGASNGTPAN 551
            .  ...|.::.|..:|.:.|.::.||.||.:|..:   ....|.:::||          :....|
  Fly   804 QQYRYLIVELEPYGMAQKDGRLRLGDEIVNVNGKHLRGIQSFAEVQRLL----------SSFVDN 858

  Fly   552 WLELEIEFDMPDAVVPASGVFSVKLLRAGKCGLGLSVSGSSHGGLVISDVKMGSPAHRSGSLRSG 616
            .::|.|..|....|..    |..|          :.:.|.|.....:|.|:.........|::| 
  Fly   859 CIDLVIAHDEVTTVTD----FYTK----------IRIDGMSTQRHRLSYVQRTQSTDSLSSMQS- 908

  Fly   617 DILLAVDQHPVQHFNVDALLKEEGRSQNPSHSSSDFTTLTIKRIVLPDFLPMSSPIYSNCPASGI 681
               |.:.|..:|..|.:...:.:|..|..:.|.:..:|       :|..:|:.....|:.|...:
  Fly   909 ---LQLQQERIQGHNTEQEQEAQGEDQCDARSMASVST-------MPTPMPLMQHRRSSTPRHSL 963

  Fly   682 NLGM------------------------------GMGVSTSTDH-------------DLYSSAYV 703
            ::|.                              ....|:|.:|             |.|:..|.
  Fly   964 DVGAPEHELLRRRARSSSGQRSLALTPTPLFASGSSSCSSSPNHRLLDNENDPANDTDSYTPVYA 1028

  Fly   704 -------TAGKYAD-----------CV--SLKSRTPQPDYF-----------RVPSMDDASLQSV 737
                   .|...||           |.  |..|.||.|..|           .:.:....||:..
  Fly  1029 NRAASVCVASSLADDEKWQLLARKRCSEGSALSATPNPQQFGQRTHYARNSINLANSHYRSLRFA 1093

  Fly   738 QLR-SGSGSNGGNQA-ANSWSTGVNSRSYVAPPNTQSLTTELP-EEEDEQEQMYPGYELNRYASV 799
            ..| |.|..:...|| .||.:.|....:  .|.:|.:.||:|. :::.:|.|......|....|.
  Fly  1094 HSRLSSSRLSLFMQAPPNSLTVGEGVAN--TPSSTATTTTDLTNQQQQQQNQQQTHQSLYIKHSP 1156

  Fly   800 DCTAL--PPPMENKVYGSAASSSSKSSGSSL---------HQIIFTV------------------ 835
            ...:|  |.|..|.....|::|:|..:||||         |:....|                  
  Fly  1157 KSVSLFSPNPYVNASSSPASASTSAGAGSSLAPPAAALMHHRPSLPVAKLTIRDEEMAEVIRASM 1221

  Fly   836 -----RLEPK-------GGL--LGITLAGSEDITK---SITISGLVEGGIAHKNGQIHVGDQLLA 883
                 |..||       .||  ||.::.|..|..|   .|.:..:...|.|..:|.:..||:::.
  Fly  1222 SEGSGRCTPKTITFFKGPGLKSLGFSIVGGRDSPKGNMGIFVKTVFPSGQAADDGTLQAGDEIVE 1286

  Fly   884 IDEHSVQGMPLSHATSLLQNL--GDLVDLKILR 914
            |:.:|||||..:....|.:|:  |.:| |||||
  Fly  1287 INGNSVQGMSHAETIGLFKNVREGTIV-LKILR 1318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 9/64 (14%)
PDZ_signaling 183..254 CDD:238492 12/76 (16%)
PDZ_signaling 278..375 CDD:238492 12/96 (13%)
PDZ 496..>521 CDD:294084 8/24 (33%)
PDZ_signaling 571..658 CDD:238492 16/86 (19%)
PDZ_signaling 832..913 CDD:238492 29/117 (25%)
PDZ_signaling 973..1055 CDD:238492
aNP_001014543.1 PDZ_signaling 775..865 CDD:238492 21/99 (21%)
PDZ_signaling 1230..1317 CDD:238492 27/87 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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