DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and loco

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster


Alignment Length:1195 Identity:223/1195 - (18%)
Similarity:351/1195 - (29%) Gaps:441/1195 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 HHHPPT-------DTALAPMLSVDRAMSPAQSEDSGLAPERGTT--------------------- 79
            |||||.       .||:....:.....|||  .:||.||...:|                     
  Fly     3 HHHPPLPITGASGSTAVGTGAAAAEDASPA--ANSGPAPISTSTTPSGSNSQQHQRRRKKRANYN 65

  Fly    80 ---YATITLPRNALHLAITFAERNDLSYPPVVGSLNPVGHAADFLAPGDRLHQIDGISTIGLSNQ 141
               ..|:.:.|.......|.:.:.......::.| :|...|.  |..||.|..::|::...|.::
  Fly    66 YNGIRTVEVRRGYNGFGFTISGQQPCRLSCIISS-SPAEQAG--LRSGDFLISVNGLNVSKLPHE 127

  Fly   142 KVMNMLCAGGSDACPAIVEIEYSLPECTVSQNSLCVTSKLAQITVERESGCLGLTLRGGADYPLI 206
            .|:.::..........|.|..||  :.:..:|        |..|:..:  .|..:||   ..|..
  Fly   128 TVVQLIGNSFGSIRMQIAENYYS--DSSDEEN--------AHATLRGQ--LLAASLR---HKPRF 177

  Fly   207 VTH--------------------VRPH----GPVYKTGRIKPG----------DRLLRVDNVS-- 235
            :.|                    |.||    .|.:.|  :||.          .:...|.|||  
  Fly   178 LHHKAKLHRLRNSPQKKLNPPEAVEPHKSKSSPDHPT--LKPVLEDPPLTANLSKAADVANVSAM 240

  Fly   236 --LIGKTLAEAQQIIKCGGHVSGYTNLTIEYDVSV-----VQSVEFSMGPLLIEIERP------- 286
              .:|....|.:.|:       ||.. |||....:     :|:|...:..|..|..:|       
  Fly   241 VRAVGSAALECRVIV-------GYLG-TIEMPKQISHSSKLQTVRSCIRKLRQEKRQPTIVLMCI 297

  Fly   287 ------MNDKLGLVLCNYTAA---VPASGSGSSTPSSG------------EKIEESAGVFIASIL 330
                  :....|.||..|::|   ..:|.|.|.....|            |:.|.||| ..|:..
  Fly   298 TPDSLSLQSSSGGVLATYSSARLNFVSSSSESENRFFGLVTSAVHNTQIEEEYEPSAG-SAAAAG 361

  Fly   331 PASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTGRGYTQMQIMPAHALARRGHTT 395
            ..||:..|       .|..||..:|||.                     ..:..||         
  Fly   362 HISISHSC-------HVFVIDTKLIEHA---------------------QHLQRAH--------- 389

  Fly   396 LGSPKYSFSTLESRKSSTAGRQRQRFARKSSLPLENPACGTPGSTG------GSMGTGGIHGSSS 454
                       |.|...|..            |:.|.....|.::.      .||.|..|...:|
  Fly   390 -----------EFRLQCTRD------------PISNLCLEFPNNSEYVVNLVRSMYTMRILPPAS 431

  Fly   455 LGMGLGLCRAESFPVLLDCSHGAGIILSETVSGSGGSGAVAIAQIVPDS---------------V 504
                    |:..    .|...|||        .:...||||.|.....|               :
  Fly   432 --------RSHQ----ADYEAGAG--------AAAAGGAVAAAHSPQPSNHSEISTTTSNSDSGI 476

  Fly   505 ADRSGCIQAGDRIVAINKMYSLDAAAMRQLLEGGSSRNGASN----------------GTPANWL 553
            ...:.|....|||:.::            .|..|:....|::                |.|.|.|
  Fly   477 GFNNDCTNISDRILVVD------------FLAAGAGAAAAAHAGPPTYPAPARPLGIVGIPDNRL 529

  Fly   554 ELEIEFDMPDAVVPASGVFSVKLLRAGKCGLGLSVSGSSHGGLVISDVKMGSPAHRSGSLRS-GD 617
            .:..   |||         ...|||:....     |......|:.|...:.|||....|.|| .|
  Fly   530 TVRA---MPD---------HSALLRSPPAS-----SSLRRPNLLASFNLIQSPATNLTSTRSCDD 577

  Fly   618 IL-LAVDQHPVQHFNV----DALLKEEGRSQNPSHSSSD--------FTTLTIKRIVLPDFLPMS 669
            :| |.||..|.....|    |..|.....|.:..|:.:.        ..:|.::....|.  .:|
  Fly   578 VLNLFVDDSPRTLAAVASMDDISLHSAAPSLDEGHTFAHPACVPRKMRRSLALETPTTPH--KLS 640

  Fly   670 SPIYSNCPASGINLGM-----------GMGVSTSTD-----HDLYSS----AYVTAGKYADCVSL 714
            :.::.. |.|..:||.           |..:..:.|     .:|:.|    ..::|...:.|: |
  Fly   641 AQVFGQ-PGSRHSLGFEAIDSVQSSVSGACMDQTMDTWASLQNLHKSHKDRTSMSASSSSHCL-L 703

  Fly   715 KSRTPQPDYFRVPSMDDASLQSVQLRSGSGSNGGNQA--AN------SWSTGVNSRSYVAPPNTQ 771
            ::...:||.                        ||:|  ||      :|     .:|....|.:.
  Fly   704 EATNSEPDL------------------------GNRALPANASPFRRAW-----GQSSFRTPRSD 739

  Fly   772 SLTTELPEEEDEQEQMYPGYELNRYASVDCTALPPPMENKVY-GSAASSSSKSSGSSLHQIIFTV 835
            .:.       .||:|:.....:.|.||::.:      :|.:| .:....|...|..|.||:  ::
  Fly   740 KVA-------KEQQQLGQSSPVRRTASMNAS------DNDMYIKTLMLDSDLKSSRSQHQL--SL 789

  Fly   836 RLEPKGGLLGITLAGSEDITKSITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQGMPLSHATSL 900
            ...||   :..|.|....||.|:...|                    |..:|   |.|.|.|.|.
  Fly   790 LQVPK---VLTTPAPPSAITASVAAEG--------------------AAQDH---GCPSSWAGSF 828

  Fly   901 LQNLGDLVDL-------------------------KILRSHDLANGSHLPQTQAIYAKVQRRPRS 940
            .:.|.|...:                         ::|.|    ....:.|.:.|:||......|
  Fly   829 ERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERYRLLES----EADRVAQAREIFAKHLANNSS 889

  Fly   941 PSANTEASKESGSGNANGGGAVNGNSGSGKPRVF---HVTLYKDKVYDDYGFSVSDGLYERGVFI 1002
            ...|.::...|         ..........|.:|   ...::....:|.|...:...||:.  .:
  Fly   890 DPVNVDSQARS---------LTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYKS--CV 943

  Fly  1003 NRIRSGGPADMCGLLKPFDRIMQVN 1027
            ...:...|....||  ..|.:::.|
  Fly   944 EAEQKNQPLPYSGL--DLDELLKTN 966

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 13/64 (20%)
PDZ_signaling 183..254 CDD:238492 20/108 (19%)
PDZ_signaling 278..375 CDD:238492 27/124 (22%)
PDZ 496..>521 CDD:294084 6/39 (15%)
PDZ_signaling 571..658 CDD:238492 24/100 (24%)
PDZ_signaling 832..913 CDD:238492 17/105 (16%)
PDZ_signaling 973..1055 CDD:238492 10/58 (17%)
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492 13/78 (17%)
PTB_RGS12 251..391 CDD:269984 37/196 (19%)
RGS_R12-like 828..941 CDD:188661 17/125 (14%)
RGS12_RBD 1073..1145 CDD:176412
RBD 1144..1213 CDD:128731
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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