DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and Mhcl

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_732109.2 Gene:Mhcl / 41955 FlyBaseID:FBgn0026059 Length:2194 Species:Drosophila melanogaster


Alignment Length:659 Identity:128/659 - (19%)
Similarity:204/659 - (30%) Gaps:206/659 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   410 KSSTAGRQRQRFARKSSLPLENPACGTPGSTGGSMGTGGIHGSSSLGMGLGLCRA---------- 464
            |.|.....::|  ||....|...|.||.|..|.. |..|:.||.|....|.|...          
  Fly     6 KKSAGDEDKER--RKREKKLRKEAKGTSGGPGMG-GVTGVTGSMSTDELLRLDEVRRSLKIRGRR 67

  Fly   465 ---ESFPVLLDCSHGAGIILSETVSGSGGSGAVAIAQIVPDSVADRSGCIQAGDRIVAINKMYSL 526
               |..|..:...:.|....:.....:|||...|:....|:.  ||      |:..:..:.|..:
  Fly    68 KEKEKLPSGITADYSADFFAALNADANGGSNGGAVGAADPEQ--DR------GNEEIVASVMTHI 124

  Fly   527 DAAAMRQLLEGGSSRNGASNGTPANWLE---------LEIEFDMP-DAVVPASGVFSVKLLRAGK 581
            ::.|          .|||  |...|:.|         |:..|..| ....|..|:     |:..:
  Fly   125 ESRA----------SNGA--GVSVNYSEVTHSLLSGGLKNRFLPPIPPKPPKRGI-----LKGSR 172

  Fly   582 CGL-----GLSVSGSSHGG-----LVISDVKMGSPAHRSGSLRSGDILLAVDQHPVQHFNVDALL 636
            ..:     .:|.:||:.|.     :::.:.......:...:..:|.|.....||.....:|::| 
  Fly   173 SNMTNVHEEISFAGSAGGAGGTPEMLLRNTFQNESLYEGAARGAGSIGSNSSQHGTSFTSVESL- 236

  Fly   637 KEEGRSQNPSHSSSDFTTLTIKRIVLPDFLPMSSPIYSNCPASGINLGMGMGVSTSTDHDLYSSA 701
                      .|..:.|....:.:.||     ::..|...| .|.:.|..:.|.||......|..
  Fly   237 ----------RSDGEQTGGQQRAMTLP-----ANARYGALP-QGNSQGSHLHVLTSPSPSADSLT 285

  Fly   702 YVTAGKYADCVSLKSRTPQPDYFRVPSMDDASLQSVQLRSGSGSNGGNQAANSWSTGVNSRSYVA 766
            ..|...:|        ||           ..||..|         |.:|..:.|:          
  Fly   286 DTTNSSFA--------TP-----------PFSLSPV---------GESQGIDRWA---------- 312

  Fly   767 PPNTQSLTTELPEEEDEQEQMYPGYELNRYASVDCTALPPPMENKVYGSAASSSSKSSGSSLHQI 831
                     .:...||.:..:.|         |....||||.:..:  ....|..:..|.||.:.
  Fly   313 ---------RVHAFEDVELPLPP---------VQLVKLPPPRQLVI--RRQKSPRQDFGFSLRKA 357

  Fly   832 IFTVRLEPKGGLLGITLAGSEDITKSITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQGMPLSH 896
            |...|.|          :.:..|.:.:..:....||.|  .|.: .||:|:.::...|..:|...
  Fly   358 ICLDRTE----------SLTSPIFRPVIFAEPGAGGGA--TGLL-PGDRLIKVNGTPVGELPREI 409

  Fly   897 ATSLLQNLGDLVDLKILR----------------------SHDLANGSHLPQTQAIYAKVQRRPR 939
            ...:::|.|:.|.:::..                      .|.:.||:         ....||  
  Fly   410 IIEMIRNSGEAVTVEVQPVAELVELSKRCMAPSTATVEEIDHSITNGN---------CNTLRR-- 463

  Fly   940 SPSANTEASKESGSGNANGGGAVNGNSGSGKPRVFHVTLYKDKVYDDYGFSVSDG-------LYE 997
              ||:....::|...|.||||...|..|.|               .|....|:|.       |..
  Fly   464 --SASKRFKRQSRHENGNGGGEEGGAKGVG---------------HDLEADVADASQPERVWLVH 511

  Fly   998 RGVFINRIR 1006
            ||.|...||
  Fly   512 RGGFTAAIR 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492
PDZ_signaling 278..375 CDD:238492
PDZ 496..>521 CDD:294084 4/24 (17%)
PDZ_signaling 571..658 CDD:238492 13/96 (14%)
PDZ_signaling 832..913 CDD:238492 16/80 (20%)
PDZ_signaling 973..1055 CDD:238492 9/41 (22%)
MhclNP_732109.2 PDZ_signaling 339..426 CDD:238492 20/101 (20%)
MYSc 556..1317 CDD:214580
MYSc_Myo18 575..1305 CDD:276837
GBP_C <1540..1750 CDD:303769
COG1340 1565..1833 CDD:224259
coiled coil 1723..1734 CDD:293879
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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