DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and ptpn3

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_687930.5 Gene:ptpn3 / 407635 ZFINID:ZDB-GENE-030131-2934 Length:839 Species:Danio rerio


Alignment Length:411 Identity:91/411 - (22%)
Similarity:140/411 - (34%) Gaps:135/411 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 ECTVSQNSLCVTSK---------LAQITVERESGCLGLTLRGGAD--YPLIVTHVRPHGPVYKTG 220
            :.|:.::.|.|..|         |.:|:.::: |..|..::||.|  .||.::||....|   .|
Zfish   418 DITIEEDDLHVWDKSVTADGDLLLVRISPDQD-GKFGFNVKGGVDQKMPLAISHVNLASP---AG 478

  Fly   221 RIKP----GDRLLRVDNVSLIGKTLAEAQQIIKCG--GHVSGYTNLTIEYDVSVVQSVEFSMGPL 279
            |..|    ||::|.::...:...|..:....||..  .|......|.....||:  .||    |.
Zfish   479 RCVPPLMEGDQVLLINGRDISEHTHQQVVMFIKASRESHSKELALLVRRKGVSL--RVE----PT 537

  Fly   280 LIEIERPMNDKLGLVLCNYTAAVPASGSGSSTPSSGEKIEES----------------------- 321
            |         :|||.|       |...|..||..|||.:|||                       
Zfish   538 L---------QLGLTL-------PGEISPLSTHPSGETLEESMARLEKGLVTGTLLLHFEKLYRK 586

  Fly   322 -AGVFIA--------------SILPASIADRCGALSVGDQVLSIDDTMIE--------------- 356
             .|:.::              .:||..|. |......||..::......|               
Zfish   587 KEGMLMSCAKQSENMDKNRYKDVLPYDIT-RVVLQEEGDDYINASHVKTEPAGCVLQYIAAQGPL 650

  Fly   357 -HT-------AFSPD-EVMTILDTSTGRGYTQMQIMPAHALARRGHTTLGSPKYS------FSTL 406
             ||       .:..| .|:.:|.|.|.||.|:......|....|.:..|....:|      :.|.
Zfish   651 PHTCTHFWRSVWEQDVNVIIMLTTLTERGRTKCHQYWPHPPEVRDYGYLQVCCHSEECNLAYVTR 715

  Fly   407 ESRKSST-AGRQRQRFARKSSLPLEN---PACGTPGSTGGSMGTGGIHGSSSLGMGLGLCRAESF 467
            :...::| :|:||      |...|:.   |..|.|..:...:..  :....|:       |.||.
Zfish   716 QLTLTNTQSGQQR------SITHLQYVAWPDHGVPEDSSDFLDF--VKSVRSM-------RQESV 765

  Fly   468 PVLLDCSHGAG----IILSET 484
            |:::.||.|.|    :|..||
Zfish   766 PLMVHCSAGIGRTGVLITMET 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492 20/78 (26%)
PDZ_signaling 278..375 CDD:238492 31/158 (20%)
PDZ 496..>521 CDD:294084
PDZ_signaling 571..658 CDD:238492
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
ptpn3XP_687930.5 B41 33..223 CDD:214604
FERM_N 35..98 CDD:286467
FERM_M 117..223 CDD:278785
PH-like 217..309 CDD:302622
PDZ_signaling 439..526 CDD:238492 23/90 (26%)
PTPc 579..829 CDD:214550 44/224 (20%)
PTPc 602..828 CDD:238006 43/201 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0792
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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