DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and Syn1

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001262192.1 Gene:Syn1 / 40424 FlyBaseID:FBgn0037130 Length:627 Species:Drosophila melanogaster


Alignment Length:535 Identity:121/535 - (22%)
Similarity:173/535 - (32%) Gaps:175/535 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   430 ENPACGTPGSTGGSMGTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILSETVSGSGGSG-- 492
            |:.....|.:.|.|....|..||:..|.|.|               |||      ..|:||.|  
  Fly    60 ESCEAAQPSNDGQSTTLNGTLGSNHSGGGGG---------------GAG------GGGTGGGGQN 103

  Fly   493 ------AVAIAQIVPDSVADRSGCIQAGDRIVAINKMYSLDAAAMRQLLEGGSSRNGASNGTPAN 551
                  |......:.|:..|.|.....|||...:|                  :.|.|.:|...:
  Fly   104 GTLPNSASLQGMNIQDTELDGSASNDNGDRDPCLN------------------NNNNAGDGGGMD 150

  Fly   552 WLELEIEFDMPDAVVPASGVFSVKLLRAGKCGLGLSVSGSSHG--GLVISDVKMGSPAHRSGSLR 614
            ..      |:||.|  |:....|:::::...|||:|:.|....  .::||.:..|..|.::..|.
  Fly   151 MC------DVPDHV--ANQKRHVRIIKSDNNGLGISIKGGRENRMPILISKIFRGMAADQAKGLY 207

  Fly   615 SGDILLAVDQHPVQ---HFNVDALLKEEGRSQNPSHSSSDFTTLTIK--RIVLPDFLPMSSPIYS 674
            .||.:|.|:...::   |......||..||          ...|.:|  |.|.|.|...|  |.|
  Fly   208 VGDAILTVNGEELRDATHDEAVRALKRSGR----------VVDLEVKFLREVTPYFRKAS--IIS 260

  Fly   675 N----------CPASGINLGMGMGVSTS-----------TDHDLYSSAYVTAG-KYAD----CVS 713
            .          ||       :|.||.||           |.:......::... ||.|    |..
  Fly   261 EVGWELQRAFLCP-------LGPGVPTSPPAPKTTPRADTRYIPLQLTHLARNLKYIDPENRCFE 318

  Fly   714 LKSRTPQPD-----YFRVPSMDDA-----SLQSV---------------------QLR------- 740
            |.|    ||     ..|.....:|     :|.|.                     :|:       
  Fly   319 LHS----PDGVHSCILRAADSAEALVWFNALHSAMGTSTQRALAEANRALTNLIGELKHIGWLSK 379

  Fly   741 --SGSGSNG--GNQAANSWSTGVNS---RSYVAPPNTQSLTTELPEEEDEQEQMYPGY------E 792
              ||.||:|  |..||:..|...||   ...|:|....|     .|..||.::..|.:      |
  Fly   380 RMSGGGSSGSAGGGAASGGSGTSNSVVAGELVSPSGRSS-----SESSDESDKWLPIFVAVTERE 439

  Fly   793 LNRYASV--DCTALPPPMENKVYGSA----ASSSSKSSGSSLHQIIFTVRLEPKGGLLGITLAGS 851
            ...|.|.  ...|...|:|  :|..|    |.:.:.||.:.....:|.||.....|:|...|...
  Fly   440 FRIYESAPWSVEAWSRPLE--IYALATTRLAGAGNNSSLNGQQTTVFCVRCGTARGVLVYWLRSE 502

  Fly   852 EDITKSITISGLVEG 866
            .....:.....||:|
  Fly   503 THRDMAAWARSLVQG 517

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492
PDZ_signaling 278..375 CDD:238492
PDZ 496..>521 CDD:294084 6/24 (25%)
PDZ_signaling 571..658 CDD:238492 21/91 (23%)
PDZ_signaling 832..913 CDD:238492 9/35 (26%)
PDZ_signaling 973..1055 CDD:238492