DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and ssp6

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster


Alignment Length:378 Identity:78/378 - (20%)
Similarity:137/378 - (36%) Gaps:110/378 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 HQIDGISTIG-LSNQKVMNMLCAGGSDACPAIVEIEYS-LPECT------VSQNSLCVT----SK 180
            |.::|..::| |...|.::     .||.     ||||: |...|      .|:..|...    .:
  Fly    74 HYVNGTGSLGRLKFHKSLD-----ASDE-----EIEYAQLSRSTHILGRHKSERYLASNPDEDRR 128

  Fly   181 LAQITVERESGCLGLTLRG-GADYP--------LIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSL 236
            ...|.||:::...|.||:. |..|.        ..|.:|...||.|:.| ::.||.:|     |:
  Fly   129 RRTIIVEKKNNSYGFTLQSYGIHYKRDEELEMITYVDYVEYGGPAYRAG-MREGDVIL-----SI 187

  Fly   237 IGKTLAEAQQ------IIKCGGHVSGYTNLTIEYDVSVVQSVEFSMGPLLIE--IERPMNDKLGL 293
            .||.:.:|..      |.:|...:    .:.:.:: ..|:.|:..|..:.::  :::.||:...:
  Fly   188 NGKDMEKADHKTIVEFIKQCDTRM----RMVVLFE-DCVRKVDLHMRYIQLQSMLQQKMNELERV 247

  Fly   294 VLCN--------YTAAVPA--SGSGSSTPSSGEKIEESAGVFIASILPASIADRCGALSVGDQVL 348
            .|..        .|.::||  ..:.:::||.||           .:.|..:|...|         
  Fly   248 HLRERELLEGKWKTHSLPARKKANANTSPSDGE-----------GVSPTEVAGEAG--------- 292

  Fly   349 SIDDTMIEHTAFSPDEVMTILDTSTGRG------------YTQMQIMPAHALARRGHTTLGSPKY 401
                  ....|.|.::|..|.....|.|            .|...:.|.:....|  .|.||.:.
  Fly   293 ------FYRPALSTEDVPNIAARQHGVGGPGIIPPPAQFMLTYHYLDPTYRYVLR--PTHGSSEE 349

  Fly   402 SFSTLESRKSSTAGR---QRQRFARKSSL---PLENPACGTP----GSTGGSM 444
            ....|..::||:..:   ||....:..|:   .:..|....|    .:||||:
  Fly   350 FVDGLGLQRSSSDHQPPAQRYVLQQTESVDANSMTQPTTTAPTQYHSTTGGSV 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 5/19 (26%)
PDZ_signaling 183..254 CDD:238492 23/85 (27%)
PDZ_signaling 278..375 CDD:238492 17/108 (16%)
PDZ 496..>521 CDD:294084
PDZ_signaling 571..658 CDD:238492
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 23/95 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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