DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and Fife

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001261340.1 Gene:Fife / 38337 FlyBaseID:FBgn0264606 Length:1314 Species:Drosophila melanogaster


Alignment Length:662 Identity:140/662 - (21%)
Similarity:220/662 - (33%) Gaps:190/662 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 ADRCGAL-----SVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTGRGYTQMQIMPAHALARRGHT 394
            |.:.|||     ::...:|::.|.:   ...||...:...|..|...|                 
  Fly    34 ASQTGALNKMKATISSSLLTVTDKV---NKMSPRPSLVPTDADTSGSY----------------- 78

  Fly   395 TLGSPKYSFSTLESRKSSTAGRQRQRFARKSSLPLENPACGTPGSTGGSMGTGGIHGSSSLGMGL 459
              |||.|     :|::     :|:|.:....:....|.:.|...:|||  |.||.......|...
  Fly    79 --GSPSY-----QSQQ-----QQQQDYGSSLNNNNNNSSGGGTATTGG--GGGGAAAKQEPGRRA 129

  Fly   460 GLCRA--ESFP--------------VLLDCS-------HGAGIILSETVSGSGGSGAVAIAQIVP 501
            |.||.  :||.              |..||:       |....:...:|.....:..|.|.|...
  Fly   130 GACRVCLKSFKPDDYHKTCFECQQRVCEDCASYSKLDEHEDATMWRCSVCRRKMASRVCIPQDST 194

  Fly   502 DSVADRSGCIQAGDRIVAINKMYSLDAAAMRQLLEGGSSRNGA-SNG---TPANWLELEIEFDMP 562
            ||:.|       ...:.|:.:.:| ||..      |.|::..| |||   .|....||....|  
  Fly   195 DSMLD-------VPVLEALQRRHS-DAKL------GSSTQTLAPSNGAALAPPRSPELRRHSD-- 243

  Fly   563 DAVVPASGVFSVKLLRAGKCGLGLSVSGSSHGGLVISDVKMGSPAHRSGSLRSGDILLAVDQHPV 627
              |.|||   ..:|.|..|.|..::.|.|:            ||....|.          |..|.
  Fly   244 --VSPAS---LKELERQLKGGRSMAPSRSN------------SPPRGEGP----------DGQPP 281

  Fly   628 QHFNVDALLKEEGRSQNPSHSSSDFTTLTIKRIVLPDFL--PMSSPIYSNCPASGINL-GMGMGV 689
            ....:..:....|......||..|            |..  |:...:....||.|:.. |.|:|:
  Fly   282 FGAPLSRMQSRRGSRVARQHSYDD------------DMKTGPVGGSMGGGGPALGLGADGAGLGI 334

  Fly   690 ST----STDHDLYSSAYVTAGKYADCVSLKSRTPQPDYFRVPSMDDASLQSVQLRSGSGSNGGNQ 750
            .|    .:.:|:::......|          .||.....|.|. :...:..:||   .||...:.
  Fly   335 PTMPRRKSAYDVFAPGLTQGG----------ATPATQLQRSPG-EGGIMPPIQL---PGSRRPSF 385

  Fly   751 AANSWSTGVNSRSYVAPPNTQS--LTTELPEEEDEQEQMYPGYEL-------NRYA--SVDCTAL 804
            .....|..:.:......|:..|  ||.     :|::.....|.:|       ||.|  :|..:::
  Fly   386 RVPHPSEDIQNDDSPGSPDKGSPVLTV-----DDDRRMRRRGSQLPDIAMLQNRGALPAVPPSSI 445

  Fly   805 PPPM-----ENKVYGSAASSSSKSSGSSLHQIIFTV--------------RLEP-------KGGL 843
            ||||     .|.....|....:...|.::..:|..|              |.:|       :|  
  Fly   446 PPPMASFTGPNLEDLEAPRRQTSMDGEAIRIVIHDVDSGPICASKRRIILRRDPTDKAHRTRG-- 508

  Fly   844 LGITLAGSE---DITKSITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQGMPLSHATSLLQNLG 905
            .|:.:.|.:   |......|...|.||.|.||| :..||::|..:..|:.........|::...|
  Fly   509 FGMRVVGGKTGADGRLFAYIVWTVPGGAAEKNG-LQQGDKILEWNGMSLIDRSFEEVCSIMDRTG 572

  Fly   906 DLVDLKILRSHD 917
            |:|:|.:..:.|
  Fly   573 DVVELLVEHATD 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492
PDZ_signaling 278..375 CDD:238492 10/44 (23%)
PDZ 496..>521 CDD:294084 6/24 (25%)
PDZ_signaling 571..658 CDD:238492 15/86 (17%)
PDZ_signaling 832..913 CDD:238492 25/104 (24%)
PDZ_signaling 973..1055 CDD:238492
FifeNP_001261340.1 FYVE_BSN_PCLO 130..187 CDD:277290 10/56 (18%)
PDZ_signaling 491..580 CDD:238492 23/91 (25%)
DegQ <526..577 CDD:223343 16/51 (31%)
C2A_RIM1alpha 651..779 CDD:175997
C2 1163..1304 CDD:301316
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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