DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and patj

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_005161760.1 Gene:patj / 368723 ZFINID:ZDB-GENE-030616-129 Length:1914 Species:Danio rerio


Alignment Length:1494 Identity:276/1494 - (18%)
Similarity:469/1494 - (31%) Gaps:556/1494 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 PPTDTALAPMLSVDRAMSPAQSEDSGLAPE-RGTTYATITLPRNALHLAITFAERNDLSYPPVVG 109
            ||...|:.|:.|:. ...|..:..:...|. .|.....:.|.:....|.|:....|.|:      
Zfish   328 PPPAPAMGPVSSLP-PPPPVPARRASRTPNLEGFEIHEVALKKEGQSLGISIIGHNALT------ 385

  Fly   110 SLNPVGHAADFLAPG------------DRLHQIDGISTIGLSNQKVMNMLCAGGSDACPAIVEIE 162
            |.:.||.....:.||            ||:..:||::..|.:||:|:.::...|......:|...
Zfish   386 SEDAVGVYVKNVIPGSIAEQTGKIQIHDRIISLDGVNLQGYNNQEVLEVMKQSGDVVHLTLVRKI 450

  Fly   163 YSLPECTVSQNSL-CVTSKLAQITVERES-----------------------------------G 191
            .| |:.|..:.|| .|..:.::::::|.|                                   .
Zfish   451 IS-PKRTTMEKSLDKVQRESSRVSLKRSSEMKARADQRGSVVESIDPALSGIKQQLQANMQEPAS 514

  Fly   192 CLGLTLRG------GADY--------PLI--------------------------------VTHV 210
            ...:.||.      |..|        |:|                                ::.|
Zfish   515 LTEMELRAKWEQALGPHYDVMIVQLDPVIEDDIELQKYSKLLPIHTMRLGVELDSFDGHHYISTV 579

  Fly   211 RPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIK---------CGGHVSGYTNLTIEY-- 264
            .|.|||.|.|.::|.|.||.|:.|.|.||:..|:...::         |...::...|   ||  
Zfish   580 APEGPVAKHGLLRPEDELLEVNGVQLYGKSRRESVAFLREVPTPFTLVCCRRLAKEDN---EYHP 641

  Fly   265 ------DVSVVQSVEFSMGPLLIE------------------IERPMNDKLGLVLCNYTAAVPAS 305
                  ..|:.:.:|.::..|..:                  :||.::|: |..|      .|.|
Zfish   642 ESEDWHSSSLQEQIEHNLSMLARDTSLRDSIREEFQARQASAVEREVDDE-GEPL------EPIS 699

  Fly   306 GSGSSTPSSG---------------------------EKIEESAG----------------VFIA 327
            ..........                           ||.|...|                :.|.
Zfish   700 PEKEQMDQENDDDDEEEEEEDEGELALWSPNVQVLELEKAERGLGFSILDYQDPMDVARSVIVIR 764

  Fly   328 SILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDT---------------STGRGY 377
            |::|..:||..|.:..|||::.::||.:|..:.:  :.:.:|.:               :..||.
Zfish   765 SLVPGGVADNHGGIFPGDQLVFVNDTHLETCSLA--QAVEVLKSAPPGKVYLGIRKPLAAEDRGS 827

  Fly   378 TQMQIMPAHALARR-------GHT--------TLGS-----------------PKYS-------- 402
            .|..:.|..::..:       .||        ..||                 |:|:        
Zfish   828 GQQSLWPVESVDEQPTAKQAVSHTLPPMPEDFVNGSILSDDLDEEPELILDAEPRYASPLTTVDL 892

  Fly   403 ------------------FSTLESRKSSTAG-RQRQRFARKSSLPLENPACG------------- 435
                              .:.:|.::||... .....:..:.|...|.||..             
Zfish   893 QPDVEKEMAVDEEEEDVDVNVMEDQQSSKVNDTSLPSYLSEKSRSWEEPATSSRYHLNTEPDLQE 957

  Fly   436 ------------------------------TPGSTGGSMGTG-----------GIHGSSSLGM-- 457
                                          |..|...|...|           ....:||...  
Zfish   958 QVDDDLSMNLEKIQLQPLKIPLGHFTSWVETADSDSDSRNEGSELTLTDTDNESAQRTSSRNKKR 1022

  Fly   458 ----------------GLGLCRAESFPVLLDCSH-----------------GAGIILSETV---- 485
                            |.|    |..||.   ||                 |..|:...||    
Zfish  1023 RNQAGPTRGDLPEREEGEG----EETPVF---SHWGPPRRVEVWAEPEESLGISIVGGRTVIKRL 1080

  Fly   486 -SGSGGSGAVAIAQIVPDSVADRSGCIQAGDRIVAIN---------------------------- 521
             :|....| :.|.|::.||.|.|:|.::.||:|:.::                            
Zfish  1081 KNGEELKG-IFIKQVLADSPAGRTGALKTGDKILQVSGVDLQNASHEEAVQTIKAAPSPVVFIVQ 1144

  Fly   522 ------KMYSLDAAAMRQLLEGGSSRNGASNGT-------------PANWLELEIEFDMPD---- 563
                  :..|:.|::::|......:...|..|.             |:...|.|.|.:..|    
Zfish  1145 SLSSTPRPVSVTASSIKQHKAKRKAAQKAGQGAAPPPMRLPPPYRPPSQVQEEEHEQEEEDEQDT 1209

  Fly   564 -------AVVPASGVFSVKLLRAGKCGLGLSVSGS---SHGGLVISDVKMGSPAHRSGSLRSGDI 618
                   |.:|  |...:..|...:.|||||::|:   |...:.:..:..|.||.|.|.::.||.
Zfish  1210 EVIRQRYADLP--GELLIVELEKDRNGLGLSLAGNRDRSCMSIFVVGITTGGPASRDGRIKVGDE 1272

  Fly   619 LLAVDQHPV---QHFNVDALLK-------------EEGRSQ--------NPSHSSSDFT-----T 654
            ||.::...:   .|.|..|::|             |:..:|        .|:..||..|     .
Zfish  1273 LLEINSQVLYGRSHQNASAIIKSAASKVKLVLVRNEDAINQMAVTPFPSQPALFSSSETHENPPA 1337

  Fly   655 LTIKRIVLPDFLPMS-SPIYSNCPASGINLGMGMGVSTSTDHDLYSSAYVTAGKYADCVSLKSRT 718
            :..::..||:.||:| ||     |.:.:|.......:|::....:.|  :|.|:.|    :|...
Zfish  1338 VPAEKPQLPESLPLSRSP-----PENTLNKDQACVTATASSDPTHKS--LTDGESA----VKKLK 1391

  Fly   719 PQPDYFRVPSMDDASLQSVQLRSGSGSNGGNQAANSWSTGVNSRSYVAPPNTQSLTTELPEEEDE 783
            |.......||...|..|..|:.|.......:...::.|..|.|.:...|.:..|...|...::..
Zfish  1392 PAEKLLESPSEQSAKPQVEQIPSLPKLQRSSTKPSAGSLEVTSSASSVPVSGTSPDFEYCSKDPA 1456

  Fly   784 QEQMYPGYE-------------LNRYASVDCTALPPPMENKVY--GSAASSSSKSSGSSLHQI-- 831
            ...:.||.|             |:.....| |.|...:.::||  |:||......:|..:.::  
Zfish  1457 TCPIVPGQETVIEISKGRSGLGLSIVGGKD-TQLDAIVIHEVYEEGAAARDGRLWAGDQILEVNG 1520

  Fly   832 ----------------------------------------IFTVRLEPKGGL-LGITLAGSEDIT 855
                                                    :|.|.|:.|.|. ||:::.|..: .
Zfish  1521 VDLRSVAHEDAIAALRQTPPKVRLTVLRDEAQYRDEENLDVFPVELQKKTGRGLGLSIVGKRN-G 1584

  Fly   856 KSITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQGMPLSHATSLLQ--------NLGDLVDLKI 912
            |.:.||.:|:||.|..:|::..|||:|::|...::........::|:        .||.|.....
Zfish  1585 KGVFISDVVKGGAADLDGRLMQGDQILSVDGEDMRQASQETVAAILKCARGKVLLELGRLKAASW 1649

  Fly   913 LRSHDLANGSHLPQTQAIYAKVQRRPRSPSANTEASKESGSGNANGGGAVNGNSGS--GKPRVFH 975
            :.|...:.||     |..:|.......:|:..|.|...|.:.|.|........|.|  .:|.|..
Zfish  1650 ISSRRTSQGS-----QMSHASGSSSTPTPTPPTVAPPPSQTPNNNSRNIAEPISKSTVTEPGVRT 1709

  Fly   976 VTLYKDKVYDDYGFSVSDG----LYERGVFINRIRSGGPADMCGLLKPFDRIMQVNEMKTQDFD 1035
            |.:.:... |..|.|::.|    |.:..:||..|::.|.|.....||..|||:.:|   :|..|
Zfish  1710 VEITRGPT-DALGISIAGGKGSPLGDIPIFIAMIQANGVAAKTHRLKVGDRIVSIN---SQSLD 1769

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 18/76 (24%)
PDZ_signaling 183..254 CDD:238492 26/160 (16%)
PDZ_signaling 278..375 CDD:238492 25/172 (15%)
PDZ 496..>521 CDD:294084 10/24 (42%)
PDZ_signaling 571..658 CDD:238492 27/118 (23%)
PDZ_signaling 832..913 CDD:238492 25/89 (28%)
PDZ_signaling 973..1055 CDD:238492 20/67 (30%)
patjXP_005161760.1 L27_2 12..69 CDD:117611
PDZ_signaling 131..>191 CDD:238492
PDZ_signaling 238..317 CDD:238492
PDZ 361..449 CDD:214570 20/93 (22%)
PDZ_signaling 563..627 CDD:238492 17/63 (27%)
PDZ_signaling 731..817 CDD:238492 17/87 (20%)
PDZ_signaling 1053..1144 CDD:238492 16/91 (18%)
PDZ 1222..1307 CDD:214570 21/84 (25%)
MPDZ_u10 1398..1463 CDD:293272 12/64 (19%)
PDZ 1464..1549 CDD:214570 11/85 (13%)
PDZ_signaling 1561..1641 CDD:238492 22/80 (28%)
PDZ_signaling 1707..1792 CDD:238492 20/67 (30%)
PDZ_signaling 1829..1913 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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