DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and scrib

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_021333089.1 Gene:scrib / 368473 ZFINID:ZDB-GENE-030616-572 Length:2047 Species:Danio rerio


Alignment Length:1012 Identity:211/1012 - (20%)
Similarity:350/1012 - (34%) Gaps:344/1012 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 AERNDLSYPPVVGSLNPVGHAADFLAPGDRLHQIDGISTIGLSNQKVMNMLCAGGSDACPAIVEI 161
            ||..|:....:..||.||.                     |:|..:|.|:|..      ||.:|.
Zfish   691 AELEDIRMSQMNSSLQPVK---------------------GVSFDQVNNLLIE------PARIEE 728

  Fly   162 EYSLPECTVSQNSLCVTSKLAQITVERESGCLGLTLRGGA--------DYPLIVTHVRPHGPVYK 218
            |    |.|:|              :.|::|.||:::.||.        |..:.::.|...||..:
Zfish   729 E----ELTLS--------------ILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR 775

  Fly   219 TGRIKPGDRLLRVDNVSLIGKTLAEAQQIIKCGGHVSGYTNL---TIEYDVSVVQS--------- 271
            .| :|.||:||.|:.|.|.|.....|.:.::..|.....|.|   .:|.:.::..:         
Zfish   776 AG-VKVGDKLLEVNGVDLHGAEHHTAVEALRNSGAAVVMTVLRERMVEPENAITTTPLRPEDDYF 839

  Fly   272 --VEFSMG-PLLIEIERP---------------MNDK-LGLVLCNYTAAVPASGSGSSTPSSGEK 317
              ...|.| |.|::.:.|               .||| ||..:        |.|.||:....|: 
Zfish   840 PRERRSSGLPFLLDPDCPAVSTGPAQRLATCLIRNDKGLGFSI--------AGGKGSTLYRVGD- 895

  Fly   318 IEESAGVFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTGRGYTQMQI 382
                .|:||:.|.....|.|...|.|||:|:||:.  ::.|....|:.:.:|   ||.       
Zfish   896 ----TGIFISRIAEGGAAHRDNILQVGDRVISING--VDMTEARHDQAVALL---TGT------- 944

  Fly   383 MPAHALARRGHTTLGSPKYSFSTLESRKSSTAGRQRQRFARKSSLPLENPACGTPGSTGGSMGTG 447
                           ||  :.:.:..|:.|:.|....| .|..|.|...|: .:|....|     
Zfish   945 ---------------SP--TITLVVDREQSSVGGASPR-TRPHSPPPPEPS-DSPEQEDG----- 985

  Fly   448 GIHGSSSLGMGLGLCRAESFPV----LLDCSHGAGIILSETVSGSGGSG--------AVAIAQIV 500
               |...||..|.....:.:|:    |:......|:.:   |.||..:.        .|.|::::
Zfish   986 ---GDEHLGNHLNCPMEDEYPIEEVTLIKAGGPLGLSI---VGGSDHASHPFGINEPGVFISKVI 1044

  Fly   501 PDSVADRSGCIQAGDRIVAINKM---YSLDAAAMRQLLEGGSSRNGASNGTPANWLELEIEFDMP 562
            |:.:|.:|| ::.||||:.:|.:   ::....|:|.||              :|..|:.: ....
Zfish  1045 PNGLASQSG-LRVGDRILEVNSIDLRHATHQEAVRALL--------------SNKQEIRM-LVRR 1093

  Fly   563 DAVVPASGVFSVKLLRAGKCGLGLSVSGSSHG-----------GLVISDVKMGSPAHRSGSLRSG 616
            |...|  |:..:.:.:.....||:|:.|.:.|           |:.||.|.....|.|.|.||.|
Zfish  1094 DPSPP--GMQEIVIHKQPGEKLGISIRGGAKGHAGNPFDPTDEGIFISKVSSNGAAARDGRLRVG 1156

  Fly   617 DILLAVDQHP---VQHFNVDALLKEEGRSQNPSHSSSDFTTLTIKRIVLPDFLPMS------SP- 671
            ..:|.|..:.   :.|.....:|:..|.|              :..::...|.|.|      || 
Zfish  1157 MRILEVGNNSLLGMTHTEAVRVLRASGDS--------------LVMLICDGFDPKSASTIEASPG 1207

  Fly   672 IYSNCPASGINLGMGMGVSTSTDHDLYSSAYVTAGKYADCV------------------------ 712
            :.:|..|:||.....|...:|.|.||.........|..:.|                        
Zfish  1208 VIANPFAAGIVRKNSMESISSVDRDLSPEEIDIMQKEVEMVRETSQWEREEMEKVERMRLEREEA 1272

  Fly   713 ---------SLKSRTPQPDYFRVPSMDDASLQSVQLRSGSGSNGGNQAANSWSTGVNSRSYVAPP 768
                     ||.|...:.||..:.::...|||.|           |:.:.|:||.....:.:...
Zfish  1273 TRLLEEETESLSSGPLKLDYKTLAALPTTSLQKV-----------NRFSPSFSTFAKMEAAMPAG 1326

  Fly   769 NTQSLTTELPEEEDEQEQMYPGYELNRYAS---VDCTALPPPMENKVYGSAASSSSKSSGSSLHQ 830
            ....|                |:| ..:||   |:..|||   .:.:..:|:|::||        
Zfish  1327 PVDPL----------------GFE-KVHASMYHVEPVALP---SSPICPAASSAASK-------- 1363

  Fly   831 IIFTVRLEPKGGLLGITLAGSEDITKSITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQGMPLS 895
                   :|:        |.|.|:        :::.|:|.:..:..|..|.:...|:     |..
Zfish  1364 -------QPQ--------ADSRDL--------VLDLGMAQEEEECLVDSQPICFSEN-----PFL 1400

  Fly   896 HATSLLQNLGDLVDLKILRSHDLANGSHLPQTQAIYAK------------VQRRPRSPSANTEAS 948
            .|..  :..|...:.:||....:..|.|......:|:|            |:....||..:.::.
Zfish  1401 VANR--KGKGCPPEERILSGPPVGYGKHGQLQPWLYSKASPSEPFRIDSPVRDAAHSPHNSQQSH 1463

  Fly   949 KESGS--------------GNANGGGAVNGNSGSGKP 971
            |.|.:              .|||     ..::.|.||
Zfish  1464 KSSSAMLGREVRYSNIHFPSNAN-----TKDNASTKP 1495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 11/49 (22%)
PDZ_signaling 183..254 CDD:238492 22/78 (28%)
PDZ_signaling 278..375 CDD:238492 30/112 (27%)
PDZ 496..>521 CDD:294084 9/24 (38%)
PDZ_signaling 571..658 CDD:238492 21/100 (21%)
PDZ_signaling 832..913 CDD:238492 12/80 (15%)
PDZ_signaling 973..1055 CDD:238492
scribXP_021333089.1 leucine-rich repeat 14..37 CDD:275380
LRR <37..306 CDD:227223
leucine-rich repeat 38..60 CDD:275380
leucine-rich repeat 61..83 CDD:275380
leucine-rich repeat 84..106 CDD:275380
leucine-rich repeat 107..129 CDD:275380
leucine-rich repeat 130..152 CDD:275380
leucine-rich repeat 153..175 CDD:275380
leucine-rich repeat 176..198 CDD:275380
LRR <192..458 CDD:227223
leucine-rich repeat 199..221 CDD:275380
leucine-rich repeat 222..248 CDD:275380
leucine-rich repeat 268..290 CDD:275380
leucine-rich repeat 291..313 CDD:275380
leucine-rich repeat 314..336 CDD:275380
leucine-rich repeat 360..380 CDD:275380
PDZ_signaling 739..816 CDD:238492 22/77 (29%)
PDZ_signaling 875..952 CDD:238492 29/118 (25%)
PDZ_signaling 1004..1092 CDD:238492 22/106 (21%)
PDZ_signaling 1102..1191 CDD:238492 21/102 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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