DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and Lnx1

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001101828.1 Gene:Lnx1 / 360926 RGDID:1308159 Length:728 Species:Rattus norvegicus


Alignment Length:576 Identity:122/576 - (21%)
Similarity:204/576 - (35%) Gaps:196/576 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 SLPECTVSQNSLCVTSKLAQITVER----ESGCLGLTLRGGADYPL---IVTHVRPHGPVYKTGR 221
            ::||.......|....::..|.:.|    ||  |.:.|.||::.||   |:.|:...|.:.:.||
  Rat   259 TVPEVFPRLFHLIPDGEITSIKINRVDPNES--LSIRLVGGSETPLVHIIIQHIYRDGVIARDGR 321

  Fly   222 IKPGDRLLRVDNVSLIG-------KTLAEAQQIIKCGGHVSGYTNLTIEYDVSVVQSVEF----- 274
            :.|||.:|:|:.:.:..       :.|.:..|:::                ::|::..:|     
  Rat   322 LLPGDIILKVNGMDISNVPHNYAVRLLRQPCQVLR----------------LTVLREQKFRSRSN 370

  Fly   275 -----SMGP------LLIEIERPMNDKLGLVLCNYTAAVPASGSGSSTPSSGEKIEESAGVFIAS 328
                 |.||      :::....| .::||:.|.                   .:::| .||||.:
  Rat   371 APAPDSYGPRDDSFHVILNKSSP-EEQLGIKLV-------------------RRVDE-PGVFIFN 414

  Fly   329 ILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTGRGYTQMQIMPAHALARRGH 393
            :|...:|||.|.|...|:||:|:                                        ||
  Rat   415 VLNGGVADRHGQLEENDRVLAIN----------------------------------------GH 439

  Fly   394 -TTLGSPK---YSFSTLESRKSSTAGRQRQRFARKSSLPL-ENPACGTPGSTGGSMGTGGIHGSS 453
             ...|||:   :.....|.|......||    .|:.|..: :...|   .|.|......|...:|
  Rat   440 DLRFGSPESAAHLIQASERRVHLVVSRQ----VRQPSPDIFQEAGC---ISNGQQSPVSGERSTS 497

  Fly   454 SLGMGLGLCRAESFPVLLDCSHGAGIILSETVSGSGGSG-----AVAIAQIVPDSVADRSGCIQA 513
            |  .....|..:...|..|.:...|:.:     |.|.|.     .:.:..:.|..|..|.|.|:.
  Rat   498 S--KPAATCHEKVVSVQKDPNESLGMTV-----GGGASHREWDLPIYVISVEPGGVISRDGRIKT 555

  Fly   514 GDRIVAINK--------------MYSLDAAAMRQLLE----------GGSSRNGASNGTPAN--- 551
            ||.::.:|.              :.|..::.:.:.||          ..::.:...|.||..   
  Rat   556 GDILLNVNGIELTEVSRTEAVAILKSTPSSVVLKALEVKEQETQEDCSPAALDSNHNVTPPGDWS 620

  Fly   552 -----WLELEIEFDMPDAVVPASGVFSVKLLRAGKCG-LGLSVSG-----SSHGGLVISDVKMGS 605
                 ||||      |..:.....|    :||....| ||..:.|     |.:....|..:..|:
  Rat   621 PSWVMWLEL------PQYLYNCKDV----ILRRNTAGSLGFCIVGGYEEYSGNQPFFIKSIVEGT 675

  Fly   606 PAHRSGSLRSGDILLAVDQHP---VQHFNVDALLKE-EGRSQNPSHSSSDFTTLTI 657
            ||:..|.:|.|||||||:...   :.|..:..:||| :|:           .||||
  Rat   676 PAYNDGRIRCGDILLAVNGRSTSGMMHACLARMLKELKGK-----------ITLTI 720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492 22/84 (26%)
PDZ_signaling 278..375 CDD:238492 20/102 (20%)
PDZ 496..>521 CDD:294084 7/24 (29%)
PDZ_signaling 571..658 CDD:238492 30/97 (31%)
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
Lnx1NP_001101828.1 RING 45..81 CDD:214546
DegQ <260..364 CDD:223343 26/121 (21%)
PDZ_signaling 276..360 CDD:238492 22/101 (22%)
PDZ_signaling 384..464 CDD:238492 26/140 (19%)
PDZ_signaling 506..589 CDD:238492 15/87 (17%)
PDZ_signaling 637..721 CDD:238492 30/99 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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