DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and pdzk1

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001122142.2 Gene:pdzk1 / 337325 ZFINID:ZDB-GENE-031222-1 Length:553 Species:Danio rerio


Alignment Length:727 Identity:138/727 - (18%)
Similarity:217/727 - (29%) Gaps:281/727 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 ERESGCLGLTLR--GGADYPLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIK 249
            :|||...|..||  .|.:..||  .....|...:...:|.|||:|||:|..:......:...:::
Zfish    13 KRESQGYGFYLRVEHGEEGHLI--RALEMGGAAELAGLKDGDRILRVNNTFVDNLEHTQVADLVR 75

  Fly   250 CGG-----HVSG----YTNLTIEYDVSVVQSVEFSMGPLLIEIERPMNDKLGLVLCNYTAAVPAS 305
            ..|     ||.|    .|......:::.:||:.....|.:..:..|   .....||....:  :|
Zfish    76 NSGMSVTLHVL
GEEAYKTAKANNVNLADLQSLPGQSQPTMNGVSTP---AAKAKLCYLQKS--SS 135

  Fly   306 GSGSSTPSSGEKIEESAGVFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAF---------S 361
            |.|.|..|:    :.:.|:|:..::...:||:.| :.:||:::.|:...:||...         :
Zfish   136 GFGFSLKST----KGAHGIFMVDVVSGGVADQAG-VKLGDRLVEINSENVEHLVHDQIVQKVKAA 195

  Fly   362 PDEVMTIL-DTSTGRGYTQMQIMP--AHALARRGHTTLGSPKYSFSTLESRKSSTAGRQRQRFAR 423
            .|.:|.:| |....|.:....|.|  :||..:.                                
Zfish   196 SDRLMLLLVDEEADRYFKSKNIQPGVSHATVKH-------------------------------- 228

  Fly   424 KSSLPLENPACGTPGSTGGSMGTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILSETVSGS 488
               ||                     |......|   :.||:          |.|.:|.|.....
Zfish   229 ---LP---------------------HKPRIADM---IKRAD----------GYGFMLKEDPKRK 256

  Fly   489 GGSGAVAIAQIVPDSVADRSGCIQAGDRIVAIN-------------------------------- 521
            |.    .|.:|...|.|:|:| ::..||:.|:|                                
Zfish   257 GH----CIGEIDKGSPAERAG-MKDMDRLAAVNGEDIENCKHEQVVEKICQGNKCCLLVLDAETD 316

  Fly   522 KMYSLDAAA-------MRQLLEGGSSRNG-------------------ASNGTPANWLELEIEFD 560
            |:|.|...:       ||..|.|......                   |...|||   .......
Zfish   317 KIYKLGGVSPLLYWEEMRGSLPGYPDNEAVAIPAVAAAVPAAVVAATPAPAATPA---PAATPTP 378

  Fly   561 MPDAVVPASGVFSVKLLRAGK--CGLGLSVSG-SSHGGLVISDVKMGSPAHRSGSLRSGDILLAV 622
            :|.|..||......||.|..:  .|.|..::| ....|..|.:|..|..|.|:| |...|:::.|
Zfish   379 VPAAAEPADVDHKPKLCRLERTSAGFGFHLNGIQGVPGQHIQEVVKGGAADRAG-LVDDDVVVEV 442

  Fly   623 DQHPVQ---HFNVDALLKEEGRSQNPSHSSSDFTTLTIKRIVLPDFLPMSSPIYSNCPASGINLG 684
            |...|:   |..|..|::..|            .||.:        |......|.:..|.||.: 
Zfish   443 DGVNVEMSTHEEVVNLIRNSG------------DTLVL--------LVADRKAYEHLKAKGIPI- 486

  Fly   685 MGMGVSTSTDHDLYSSAYVTAGKYADCVSLKSRTPQPDYFRVPSMDDASLQSVQLRSGSGSNGGN 749
                          :...:.....||       .|.|.|.:|....|.                 
Zfish   487 --------------TPQLLNKEPAAD-------VPAPAYTQVDGRKDT----------------- 513

  Fly   750 QAANSWSTGVNSRSYVAPPNTQSLTTELPEEEDEQEQMYPGYELNRYASVDCTALPPPMENKVYG 814
                                          |:|.::...|               |.|..::...
Zfish   514 ------------------------------EKDIEKPATP---------------PAPTRSRSSS 533

  Fly   815 SAASSSSKSSGS 826
            |::||||.||.|
Zfish   534 SSSSSSSSSSAS 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492 19/73 (26%)
PDZ_signaling 278..375 CDD:238492 23/106 (22%)
PDZ 496..>521 CDD:294084 9/24 (38%)
PDZ_signaling 571..658 CDD:238492 24/92 (26%)
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
pdzk1NP_001122142.2 PDZ_signaling 6..86 CDD:238492 20/74 (27%)
PDZ_signaling 126..204 CDD:238492 19/84 (23%)
PDZ 232..311 CDD:214570 18/96 (19%)
PDZ_signaling 392..471 CDD:238492 25/99 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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