DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and synj2bp

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_956211.1 Gene:synj2bp / 334599 ZFINID:ZDB-GENE-030131-6531 Length:152 Species:Danio rerio


Alignment Length:145 Identity:39/145 - (26%)
Similarity:61/145 - (42%) Gaps:31/145 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   814 GSAASSSSKSSGSSLHQIIFTVRLEPKGGLLGITLAGSEDITKSITISGLV-----EGGIAHKNG 873
            |||.|:.|        .:.||::..|.|  ||..:.|..|....:..||:.     |.|.|..:|
Zfish     3 GSAHSAPS--------DVEFTLKRGPAG--LGFNIVGGVDQQYMMNDSGIYVAKIKENGAAALDG 57

  Fly   874 QIHVGDQLLAIDEHSVQGMPLSHATSLLQNLGDLVDLKILRSHDLANGSHLPQTQAIYAKVQRRP 938
            ::..||::|||:...:..:....|..|.::.|:.|.|.|.:...|.||                |
Zfish    58 RLQEGDKILAINGRKLDNLSHGAAVELFRSAGEDVHLCIQQRPVLQNG----------------P 106

  Fly   939 RSPSANTEASKESGS 953
            .|..|:.|:|...|:
Zfish   107 TSSRADGESSSALGT 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492
PDZ_signaling 278..375 CDD:238492
PDZ 496..>521 CDD:294084
PDZ_signaling 571..658 CDD:238492
PDZ_signaling 832..913 CDD:238492 24/85 (28%)
PDZ_signaling 973..1055 CDD:238492
synj2bpNP_956211.1 PDZ_signaling 17..97 CDD:238492 22/81 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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