DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and baz

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001036283.1 Gene:baz / 32703 FlyBaseID:FBgn0000163 Length:1520 Species:Drosophila melanogaster


Alignment Length:1421 Identity:274/1421 - (19%)
Similarity:443/1421 - (31%) Gaps:537/1421 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 KLWKSKKP--IGGCVPGK--------------------SAALKQDQQQQQQQQQESHNNSFNGHH 44
            |.|.:..|  .||..|.:                    |..|| :|...|||...::..|.:|:|
  Fly   187 KRWSAAAPHYAGGDSPERLFLDKAGGQLSPQWEEDDDPSHQLK-EQLLHQQQPHAANGGSSSGNH 250

  Fly    45 HPPTDTALAPMLSVD-----------------RAMSPAQ------SEDSGLAPERGTTYATITLP 86
            .|   .|.:..||:.                 :...|||      |..:|..  :...|::.:||
  Fly   251 QP---FARSGRLSMQFLGDGNGYKWMEAAEKLQNQPPAQQTYQQGSHHAGHG--QNGAYSSKSLP 310

  Fly    87 RNA-----LHLAITFAERNDLSYPPVVGSL-NPVG--------HAADFLA----PG--------- 124
            |.:     |..|.......|.....::... :|:|        |....|.    ||         
  Fly   311 RESKRKEPLGQAYESIREKDGEMLLIINEYGSPLGLTALPDKEHGGGLLVQHVEPGSRAERGRLR 375

  Fly   125 --DRLHQIDGISTIGLSNQKVMNML--CAGGSDACPAIV------------EIEYSLPECTVSQ- 172
              ||:.:|:||..|||:..:|...|  ....|:....::            ::...:...|||. 
  Fly   376 RDDRILEINGIKLIGLTESQVQEQLRRALESSELRVRVLRGDRNRRQQRDSKVAEMVEVATVSPT 440

  Fly   173 ---------NSLCV--TSKLA---QITVERESGCLGLTLR-----GGADYPLIVTHVRPHGPVYK 218
                     .||.|  |.||.   :|.:::....||.::.     .|...|:.:.::.|.|...:
  Fly   441 RKPHAAPVGTSLQVANTRKLGRKIEIMLKKGPNGLGFSVTTRDNPAGGHCPIYIKNILPRGAAIE 505

  Fly   219 TGRIKPGDRLLRVDNVSLIGKTLAEAQQIIKCGGHVSGYT---------NLTIEYDVSVVQSVEF 274
            .||:|||||||.||...:.|||..:...|::  |..:|.|         .|..:.|....:|...
  Fly   506 DGRLKPGDRLLEVDGTPMTGKTQTDVVAILR--GMPAGATVRIVVSRQQELAEQADQPAEKSAGV 568

  Fly   275 SMGPLL--------------IEIER---------------------------------------- 285
            ::.|.:              |.:::                                        
  Fly   569 AVAPSVAPPAVPAAAAPAPPIPVQKSSSARSLFTHQQQSQLNESQHFIDAGSESAASNDSLPPSS 633

  Fly   286 -------------PMNDK----LGLVLCNYTAA-VPASGSGSSTPSSG-EKIEESAGVFIASILP 331
                         |::|.    ||:.:...|.: :.||||.:|:.|:| .|.:...|:|:.:::.
  Fly   634 NSWHSREELTLHIPVHDTEKAGLGVSVKGKTCSNLNASGSSASSGSNGLMKHDGDLGIFVKNVIH 698

  Fly   332 ASIADRCGALSVGDQVLSID-------------DTM----------------------IEHTAFS 361
            ...|.|.|.|.:.||:||::             :|:                      |..:|.|
  Fly   699 GGAASRDGRLRMNDQLLSVNGVSLRGQNNAEAMETLRRAMVNTPGKHPGTITLLVGRKILRSASS 763

  Fly   362 PDEVMTILDTSTGRGYTQMQIMPAHALARRGHTTLGSPKYSFSTLESRKSSTAG---------RQ 417
            .|    |||.|....:       :|:.:..|..:.||...:.|:  |..|..:|         ::
  Fly   764 SD----ILDHSNSHSH-------SHSNSSGGSNSNGSGNNNNSS--SNASDNSGATVIYLSPEKR 815

  Fly   418 RQRFARKSSLPLENPAC---GTPGSTGGSMG----------TGGIHGSSSLG------------- 456
            .||             |   |..||.|..|.          ||||..|:|..             
  Fly   816 EQR-------------CNGGGGGGSAGNEMNRWSNPVLDRLTGGICSSNSAQPSSQQSHQQQPHP 867

  Fly   457 ----------MGLGLC-----RAESF-----------PVLLDCSHGAGIILSETVSGSGGSGAVA 495
                      ....:|     |.||:           .:.|..:||...:|.|       ..|..
  Fly   868 SQQQQQQRRLPAAPVCSSAALRNESYYMATNDNWSPAQMHLMTAHGNTALLIE-------DDAEP 925

  Fly   496 IAQIVPDSVADRSGC----------IQAGDRIVAINKM--------------------------- 523
            ::..:|....|...|          :..|::...||.:                           
  Fly   926 MSPTLPARPHDGQHCNTSSANPSQNLAVGNQGPPINTVPGTPSTSSNFDATYSSQLSLETNSGVE 990

  Fly   524 -YSLDAAAMRQLLE-GGSSRNGASNGTPANWLELEIEFDMPDAV-VPASGVF--SVKLLRAGKCG 583
             :|.||...|.:.| ..::.:....||.....:|..|.:....: :..|.|:  |::.|.|....
  Fly   991 HFSRDALGRRSISEKHHAALDARETGTYQRNKKLREERERERRIQLTKSAVYGGSIESLTARIAS 1055

  Fly   584 LGLSVSGSSHGGLV----------------------ISDVKMGSPAHRSGSLRSGDIL---LAVD 623
            .....||..|....                      :.|:.......:|.||.|...:   |.:.
  Fly  1056 ANAQFSGYKHAKTASSIEQRETQQQLAAAEAEARDQLGDLGPSLGMKKSSSLESLQTMVQELQMS 1120

  Fly   624 QHPVQHFNVDALLKEEGRSQNPSHSSSDFTTLTIKRIVLPDFLPMSSPIYSNCPASGINLGMGMG 688
            ..|..|   .||....||.:..|        |....:..||   .|.|..:.....|.:.|   |
  Fly  1121 DEPRGH---QALRAPRGRGREDS--------LRAAVVSEPD---ASKPRKTWLLEDGDHEG---G 1168

  Fly   689 VSTSTDHDLYSSAYVTAGKYADCVSLKSRTPQPDYFR-VPSMDDASLQSVQLRSGSGSNGG---- 748
            .::..:....||  :..||:. |.|  ||..:|...| :..|         .|.|.....|    
  Fly  1169 FASQRNGPFQSS--LNDGKHG-CKS--SRAKKPSILRGIGHM---------FRFGKNRKDGVVPV 1219

  Fly   749 -NQAANSWSTGVNSRSYVAPPNTQSLTTELPEEEDEQEQMYPGYE------------LNRYASVD 800
             |.|.|           ::||.:...|...|:.:.:|:|....::            |.|.....
  Fly  1220 DNYAVN-----------ISPPTSVVSTATSPQLQQQQQQQLQQHQQQQQIPTAALAALERNGKPP 1273

  Fly   801 CTALPPPMENKVYGSAASSSSKSSGSSLHQ-IIFTVRLEPKGGLLGITLAGSEDITKSITISGLV 864
            ....|||:       .|.:...|:|  :|| .||..|.:        ..|..||:.:.       
  Fly  1274 AYQPPPPL-------PAPNGVGSNG--IHQNDIFNHRYQ--------HYANYEDLHQQ------- 1314

  Fly   865 EGGIAHKNGQIHVGDQLLAIDEHSVQGMPLSHATSLLQNLGDLVDLKILRS-------------- 915
                 |:..||..||...:|.|      .||.:|.      :.:..:::|.              
  Fly  1315 -----HQQHQISGGDSTTSISE------TLSESTL------ECMRQQVIRQRIKVEAESRRHQHY 1362

  Fly   916 -------------HDLANGSH---LPQTQAIYAKVQRRPRSPSANTEASKESGSGNANGGGAVNG 964
                         |..::||.   |.|.||....|  ||.|.....|..::...|:.....:.:.
  Fly  1363 HSQRSARSQDVSMHSTSSGSQPGSLAQPQAQSNGV--RPMSSYYEYETVQQQRVGSIKHSHSSSA 1425

  Fly   965 NSGSGKPRVFHVTLYKDKVYDDYG-FSVSDGLYERGVFINRI-----RSGG-PADM 1013
            .|.|..|  .:|..:|....:.|. .|::.....||.|:.::     .||| ||.:
  Fly  1426 TSSSSSP--INVPHWKAAAMNGYSPASLNSSARSRGPFVTQVTIREQSSGGIPAHL 1479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 21/93 (23%)
PDZ_signaling 183..254 CDD:238492 23/75 (31%)
PDZ_signaling 278..375 CDD:238492 34/204 (17%)
PDZ 496..>521 CDD:294084 4/34 (12%)
PDZ_signaling 571..658 CDD:238492 21/113 (19%)
PDZ_signaling 832..913 CDD:238492 16/80 (20%)
PDZ_signaling 973..1055 CDD:238492 12/48 (25%)
bazNP_001036283.1 DUF3534 <62..174 CDD:288873
PDZ_signaling 341..412 CDD:238492 17/70 (24%)
CRS1_YhbY <390..>436 CDD:294440 5/45 (11%)
PDZ_signaling 462..548 CDD:238492 25/87 (29%)
PDZ_signaling <686..753 CDD:238492 11/66 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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