DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and Whrn

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_038965801.1 Gene:Whrn / 313255 RGDID:631330 Length:969 Species:Rattus norvegicus


Alignment Length:1096 Identity:203/1096 - (18%)
Similarity:326/1096 - (29%) Gaps:418/1096 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 SAALKQDQQQ----QQQQQQESHNNSFNGHH----------------HPPTDTALAPMLSV---- 58
            ||.::|..|.    ..:.::|...:..|.:|                ..|....|.|||.:    
  Rat    37 SANVRQLHQALTALLSEPEREQFTHCLNAYHARRNVFDLVRTLRVLLDSPVKRRLLPMLRLVIPR 101

  Fly    59 -DRAM------------------SPAQSEDSGLAPERGTTYATITLPRNALHLAITFAERNDLSY 104
             |:.:                  .||.:...|..|..   ...::|.|...|..:.|:.|.    
  Rat   102 SDQLLFDQYTAEGLYLPATTPYRQPAWAAPDGAGPGE---VRLVSLRRAKAHEGLGFSIRG---- 159

  Fly   105 PPVVGSLNPVGHAADFLAPGD----------------------RLHQIDGISTIGLSNQKVMNML 147
                ||.:.||.....:.||.                      |:...:.:..:..|.:.|:::.
  Rat   160 ----GSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVY 220

  Fly   148 CAG---GSDACPAIVEIEYSLPECTVSQNSLCVTSKLAQITVERESG------------------ 191
            .||   |......|..........|...:||...|.|.|...:|.|.                  
  Rat   221 SAGRIPGGYVTNHIYTWVDPQGRSTSPPSSLPHGSTLRQHEDDRRSALHLLQSGDEKKVNLVLGD 285

  Fly   192 --CLGLTLRGGADYPL--IVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIKCGG 252
              .||||:||||:|.|  .:|.|.|......:| :|.||::|.|:..|.:.....||.:::|...
  Rat   286 GRSLGLTIRGGAEYGLGIYITGVDPGSEAESSG-LKVGDQILEVNGRSFLSILHDEAVKLLKSSR 349

  Fly   253 HVSGYTNLTIEYDVSVVQSVEFSMGPLLIEIERPMNDKLGLVLCNYTAAVPASGSGSSTPSS--- 314
            |:.    ||:: ||..:.....::                    :.|..:.:|..|.|..:|   
  Rat   350 HLI----LTVK-DVGRLPHARTTV--------------------DQTKWIASSRIGESITNSAGF 389

  Fly   315 -GEKIEESAGVFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTGRGYT 378
             |:..||  |.............:....|:|:|..::.|....|.....:....:......||.|
  Rat   390 PGDLTEE--GTNKPGFYKGPAGSQVTLSSLGNQTRALLDDQARHLLTEQERATMMYYLDQYRGGT 452

  Fly   379 ---------QMQIMPAHALARRGHTTLGSPKYSFSTLESRKSSTAGRQRQRF----------ARK 424
                     ..:::..||              .||.|...:...:.:...||          :.|
  Rat   453 ISVEALVMALFELLNTHA--------------KFSLLSEVRGIISPQDLDRFDHLVLRREIESMK 503

  Fly   425 SSLPLENPACGTPGSTGGSMGTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILSETVSGSG 489
            :..| ..|..|...|......||     ||.|                 |||.    |.|||   
  Rat   504 ARQP-PGPGVGDTYSMVSYSDTG-----SSTG-----------------SHGT----STTVS--- 538

  Fly   490 GSGAVAIAQIVPDSVADRSGCIQAGDRIVAINKMYSLDAAAMRQLLEG-GSSRNGASNGTPANWL 553
                                  .|.:|:     ::.:|.......||| |.:..|::|..|    
  Rat   539 ----------------------SARERL-----LWLIDLMENTLDLEGTGETTQGSTNALP---- 572

  Fly   554 ELEIEFDMPDAVVPASGVFSVK-------LLRAGKCGLGLS----------VSGSSHGGLVISDV 601
                :..:.|...|:..:..:|       |.:.....||.:          :|.::|.|:|.|..
  Rat   573 ----DVSVDDVRSPSEDLPGIKPPPPPPPLAQGHDRLLGQTRKPVREDSAPLSSAAHSGIVFSAP 633

  Fly   602 KMGSP-----------------------------AHRSGSLRSG-DILLA-VDQHPVQHFNVDAL 635
            :..||                             :|.:.|.|.. |..|| |:|||:..|     
  Rat   634 RNRSPPPPPGIAPTPTPGPSSARDSPSSPIYASISHANPSSRKPLDTHLALVNQHPIGPF----- 693

  Fly   636 LKEEGRSQNPSHSSSDFTTLTIKRIVLPDFLPMSSPIYSNCPASGINLGMGMGVSTSTDHDLYSS 700
                .|.|:|.|                    :.||     ||.....|.|:...:.::|    :
  Rat   694 ----PRVQSPPH--------------------LKSP-----PAEAPGAGAGLPPPSPSEH----A 725

  Fly   701 AYVTAGKYADCVSLKSRTPQPDYFRV---PSMDDASLQSVQLRSG------SGSNGGNQAANSWS 756
            ..|.|.::...|.:.....:||...|   |....||..|....||      ||.:.|...|::..
  Rat   726 DAVGANQHFVLVEVHRPDSEPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGETEASTSG 790

  Fly   757 TGVNSRSYVAPPNTQSLT-TELPEEEDEQEQMYPGYELNRYASVDCTALPPPMENKVYGSAASSS 820
            .|..:      .||::.. .|||:.|...|.                      .||..|....:|
  Rat   791 RGRQT------ANTKNKNGKELPQTERTTEG----------------------ANKPPGLLEPTS 827

  Fly   821 SKSSGSSLHQIIFTVRLEPKGGLLGITLAGSEDITKSI--------------------------- 858
            :            .:|:......|||.:.|..:..:.:                           
  Rat   828 T------------LIRVRKSAATLGIAIEGGANTRQPLPRIVTIQICLPRRDTEPRDRHGQAPLH 880

  Fly   859 --TISGL---------------------VEGGIAHKNGQIHVGDQLLAIDEHSVQG 891
              |:.||                     ..||.||..||:.||..:|.::..:::|
  Rat   881 APTLPGLWTRDWQHPARYPRDPCLCLPVQRGGSAHNCGQLKVGHVILEVNGQTLRG 936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 14/86 (16%)
PDZ_signaling 183..254 CDD:238492 26/92 (28%)
PDZ_signaling 278..375 CDD:238492 14/100 (14%)
PDZ 496..>521 CDD:294084 2/24 (8%)
PDZ_signaling 571..658 CDD:238492 26/134 (19%)
PDZ_signaling 832..913 CDD:238492 18/110 (16%)
PDZ_signaling 973..1055 CDD:238492
WhrnXP_038965801.1 HN_L-whirlin_R1_like 38..113 CDD:259822 12/74 (16%)
PDZ_signaling 139..216 CDD:238492 13/84 (15%)
PDZ_signaling 276..356 CDD:238492 26/84 (31%)
HN_L-whirlin_R2_like 418..498 CDD:259823 14/93 (15%)
PDZ_signaling <908..949 CDD:238492 10/29 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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