DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and Cytip

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001012086.1 Gene:Cytip / 311047 RGDID:1307990 Length:359 Species:Rattus norvegicus


Alignment Length:326 Identity:75/326 - (23%)
Similarity:123/326 - (37%) Gaps:65/326 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   733 SLQSVQLRSGSGSNGGNQAANSWSTGVNSRSYVAPPNTQSLTTELPEEEDEQEQMYPGYELNRYA 797
            |||.:..:..|..|....|.:::|      ||      .:||..|..|::.:.||.         
  Rat     2 SLQRLLQQQSSNGNLEYCADSAYS------SY------PTLTGPLTVEDNRRIQML--------- 45

  Fly   798 SVDCTALPPPMENKVYGSAASSSSKSSGSSLHQIIFTVRLEPKG---------GLLGITLAGSED 853
             .|..|..|....::  :.|.|||....|...:.:.||..:..|         .|....:..||.
  Rat    46 -ADTVATLPRGRKQL--ALARSSSLGDFSCSQRKVVTVEKQDNGTFGFEIQTYRLQNQNICSSEV 107

  Fly   854 ITKSITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQGMPLSHATSLLQNLGDLVDLKIL----- 913
            .|   .|..:.|...||..| :.|||....::..|.:|........|:::.|:|:.::.|     
  Rat   108 CT---MICKVQEDSPAHCAG-LQVGDIFANVNGVSTEGFTHKQVVDLIRSSGNLLTIETLNGTMI 168

  Fly   914 --RSHDLANGSHLPQT--------QAIYAKVQRRPRSPSANTEASKESGSGNANGGGAVNGNSGS 968
              |:...|....|.||        ::::.:.||.....:||:...:......::..|.:.|.|.:
  Rat   169 HRRAELEAKLQTLKQTLKKKWVELRSLHLQEQRLLHGDAANSPNLENMNLDESSLFGNLLGPSPA 233

  Fly   969 --GKPRVFHVTLYKDKV-------YDDYGFSVSDGLYERGVFINRIRSGGPADMCGLLKPFDRIM 1024
              .:||:...:..|..:       .||||.|||:... ||.|   .|.....|.|...|..|.|:
  Rat   234 FLDRPRLSSESSCKSWLSSLTVDSEDDYGTSVSEDSI-RGAF---SRQTSTDDECFHSKDGDEIL 294

  Fly  1025 Q 1025
            :
  Rat   295 R 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492
PDZ_signaling 278..375 CDD:238492
PDZ 496..>521 CDD:294084
PDZ_signaling 571..658 CDD:238492
PDZ_signaling 832..913 CDD:238492 20/89 (22%)
PDZ_signaling 973..1055 CDD:238492 17/60 (28%)
CytipNP_001012086.1 PDZ_signaling 76..161 CDD:238492 20/88 (23%)
Interaction with CYTH1. /evidence=ECO:0000250 166..188 5/21 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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