DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and Ush1c

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_006229284.1 Gene:Ush1c / 308596 RGDID:1303329 Length:910 Species:Rattus norvegicus


Alignment Length:948 Identity:175/948 - (18%)
Similarity:313/948 - (33%) Gaps:272/948 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 HAADFLAPGD-----------RLHQIDGISTIGLSNQKVMN-----MLCAGGSDACPAIVEIEYS 164
            |..|||...|           ..||...::.:....:.|:|     .|........|...::||.
  Rat    11 HKVDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPNRLPLFDAIRPLIPLKHQVEYD 75

  Fly   165 LPECTVSQNSLCVTSKLAQITVER--ESGCLGLTLRGGADY--PLIVTHVRPHGPVYKTGRIKPG 225
              :.|..:     :.||.::.::|  ..| |||::|||.::  .|.::|:...|.....| ::.|
  Rat    76 --QLTPRR-----SRKLKEVRLDRLHPEG-LGLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVG 131

  Fly   226 DRLLRVDNVSLIGKTLAEAQQIIKCGGHVSGYTNLTIEYDVSVVQSVEFSMGPLLIEIERPMN-- 288
            |.::|::..|:...|..|...:|:        |..|:...|..:..:.....|     |.|:.  
  Rat   132 DEIVRINGYSISSCTHEEVINLIR--------TKKTVSIKVRHIGLIPVKSSP-----EEPLKWQ 183

  Fly   289 --DKLGLVLCNYTAAVPASG---SGSSTPSSGEKIE----------------------ESAGVFI 326
              |:.          |..||   .|.|:|.:....|                      :..|:|:
  Rat   184 YVDQF----------VSESGGVRGGLSSPGNRTTKEKKVFISLVGSRGLGCSISSGPIQKPGIFV 238

  Fly   327 ASILPASIADRCGALSVGDQVL---SIDDTMIEHTAFSPDEVMTILDTS--------TGRG---- 376
            :::.|.|::...| |..|||::   .||.|.::|     .|.:.:|.:|        .|.|    
  Rat   239 SNVKPGSLSAEVG-LETGDQIVEVNGIDFTNLDH-----KEAVNVLKSSRSLTISIVAGAGRELF 297

  Fly   377 --------------YTQMQIMPAHALARRGHTTLGSPKYSFSTLESRKSSTAGRQRQRFARKSSL 427
                          ..:.:::....||...:..|...:..........:..|..:.:|:.::...
  Rat   298 MTDRERLEEARQHELQRQELLMQKRLAMESNKILQEQQEMERQRRKEIAQKAAEENERYRKEMEQ 362

  Fly   428 PLENPACGTPGSTGGSMGTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGA--GIILSETVSGSGG 490
            ..|                                ..|.|....:...|:  .:||.:|::    
  Rat   363 ISE--------------------------------EEEKFKKQWEEDWGSKEQLILPKTIT---- 391

  Fly   491 SGAVAIAQIVPDSVADRSGCIQAGDRIVAINK------MYSLDA---AAMRQLLEGGSSRNGASN 546
                  |::.|                |.:.|      .|..|.   ...::..|...::..:..
  Rat   392 ------AEVHP----------------VPLRKPKSFGWFYRYDGKFPTIRKKAKEKKKAKYDSLQ 434

  Fly   547 GTPANWLELEIE---FDMPDAVVPASGVFSVKLLRAGKCGLGLSVSGSSHGGLVISDVKMGSPAH 608
            ....|..|||.|   :...:.::...     |.|:..:  |...||.:....|..|: |......
  Rat   435 DLRKNKKELEFEQKLYKEKEEMLEKE-----KQLKINR--LAQEVSETEREDLEESE-KTQYWVE 491

  Fly   609 RSGSLRSGDILLAVDQ-------HPVQHFNVDALLKEEGRSQNPSH-SSSDFTTLTIKRIVLPDF 665
            |....|...|..|.::       .|....:|..|:....|.....| .::|...:.:.....|..
  Rat   492 RLCQTRLQQISSAENEITEMTTGPPPPPPSVSPLVPPLRRFAGGIHLHTTDLDDIPLDMFYYPPK 556

  Fly   666 LPMSSPIYSNCPASGINLGM-GMGVSTSTDH-DLYSSAYVTAGKYADCVSLKSRTPQPDYF---- 724
            .|.:.|:..:.|.|.....: ...|..|:|| ...||.:|            ..||.|...    
  Rat   557 TPSALPVMPHPPPSNPPSKVPAPPVLPSSDHMSSSSSPWV------------QHTPPPIPIPPPP 609

  Fly   725 RVPSMD-------DASLQSV----QLRSGSGSNGGNQAANSWSTGVNS----------RSYVAPP 768
            .:|:.|       .::|:.|    ..|:|...:    .|..|....:|          ||:...|
  Rat   610 SIPTQDLTPTRPLPSALEEVLGNHPFRTGDPGH----PATDWEANTHSGKPTSSPTPERSFPPAP 670

  Fly   769 NTQSLTTELPEEE-----DEQEQMYPGYELNRYASVDCTALPPPMENK--VYGSAASSSSKS--- 823
            .|...:.:.|...     .:...::..:......:|....||..|..:  ||.:|.....:.   
  Rat   671 KTFCPSPQPPRGPGVSTISKPVMVHQEHNFVYRPAVKSEVLPQEMLKRMVVYQTAFRQDFRKYEE 735

  Fly   824 -----SGSSLHQI----IFTVRLEPKGGLLGITLAGSEDI-TKSITISGLVEGGIAHKNGQIHVG 878
                 |..|..||    :..:|:: |.|.|.:.|.|..|. ...:.:|.:.|||.|.::|.:..|
  Rat   736 GFDPYSMFSPEQIAGKDVRLLRIK-KEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKG 799

  Fly   879 DQLLAIDEHSVQGMPLSHATSLLQNL----GDLVDLKI 912
            |:::||:...|....|:.|.:.||..    ||.:||.:
  Rat   800 DEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVV 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 9/46 (20%)
PDZ_signaling 183..254 CDD:238492 19/74 (26%)
PDZ_signaling 278..375 CDD:238492 27/136 (20%)
PDZ 496..>521 CDD:294084 3/24 (13%)
PDZ_signaling 571..658 CDD:238492 18/94 (19%)
PDZ_signaling 832..913 CDD:238492 26/86 (30%)
PDZ_signaling 973..1055 CDD:238492
Ush1cXP_006229284.1 harmonin_N 2..80 CDD:259819 14/70 (20%)
PDZ_signaling 85..165 CDD:238492 22/89 (25%)
PDZ_signaling 209..289 CDD:238492 17/85 (20%)
Cgr1 <316..>358 CDD:281823 5/41 (12%)
PDZ_signaling 751..838 CDD:238492 26/88 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.