DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and Pard3b

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001178737.1 Gene:Pard3b / 301455 RGDID:1584992 Length:1203 Species:Rattus norvegicus


Alignment Length:1092 Identity:218/1092 - (19%)
Similarity:349/1092 - (31%) Gaps:362/1092 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 DQQQQQQQQQESHNNSFNGHHHPPTDTALAPMLSVDRAMSPAQSEDSGLAPERGTTYATITLPRN 88
            |:|:..|:.:....|..:.......||.:|..|:   |..|...|              |.:..:
  Rat    80 DEQEPLQKIESPSGNPVDRQSPDAFDTEVAAQLA---AFKPIGGE--------------IVVTPS 127

  Fly    89 ALHLAITFAERNDLSYPPVVGSLNPVGHAADFLA--PGDRLHQIDGISTIGLSNQKVMNMLCAGG 151
            ||.|......|.  |..|..|   |...|....|  .|..|..:...|...|.|:.|||....| 
  Rat   128 ALKLGTPLLVRR--SSDPAPG---PHADAQPSTASPSGQSLKPVVLDSAQNLENRDVMNGEQTG- 186

  Fly   152 SDACPAIVEIEYSLPECTVSQNSLCVTSKLAQITVERE-------------SG-CLGLTLRGGAD 202
                         |.....::|.|...::..:|:.|.:             || .|||.:||   
  Rat   187 -------------LLMLHKTKNELSDMTRAVEISGEGDPLGIHVVPFFSSLSGRILGLFIRG--- 235

  Fly   203 YPLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIKCGG-------HVSGYTNL 260
                   :..:....:.|..:..:.:::::||.|:.||.|:||.:.:...       ||....|.
  Rat   236 -------IEENSRCKQEGLFQENECIVKINNVELLDKTFAQAQDVFRQAMKSPSVVLHVLLPQNR 293

  Fly   261 TIEYDVSVVQSVEFSMGPLLI----------EIERPMNDKLGLVLCNYTAA-------------- 301
            . :|:.||:       |.|.|          :...|...|.||...|.|.|              
  Rat   294 E-QYEKSVI-------GQLNIFGNNDSASRTKAPPPTRGKAGLKAVNPTRANSPEGEESPSPQQS 350

  Fly   302 ----VPASGSGSSTPS-----------SGEKIE-------ESAG---------------VFIASI 329
                ||..|...|:||           :.:||:       |..|               :|:.:|
  Rat   351 KSPRVPRLGRKPSSPSLSPLMGFGSKKNAKKIKIDLKKGPEGLGFTVVTRDSSIHGPGPIFVKNI 415

  Fly   330 LPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTGRGYTQMQIMPAHALARRGHT 394
            ||...|.:.|.|..||::|.::...:  |..:.:|::.:| .||.:|.|...:     :||:..:
  Rat   416 LPKGAAVKDGRLQSGDRILEVNGRDV--TGRTQEELVAML-RSTKQGETVSLV-----IARQEGS 472

  Fly   395 TL-----GSPKYSFSTLESRKSSTAGRQRQRFARKSSLPLENPACGTPGSTGGSMGTGGIHGSSS 454
            .|     |.|.....:|||               ...|.||.|                ::.|.|
  Rat   473 FLPRELKGEPDCYALSLES---------------SEQLTLEIP----------------LNDSGS 506

  Fly   455 LGMGLGLCRAESFPVLLDCSHGAGIILSETVSGSGGSGAVAIAQIVPDSVADRSGCIQAGDRIVA 519
            .|:|:.|...:|               .||.:..|    :.|..|:....|.:.|.::..|:::|
  Rat   507 AGLGVSLKGNKS---------------RETGTDLG----IFIKSIIHGGAAFKDGRLRMNDQLIA 552

  Fly   520 INKMYSLDAA---AMRQLLEGGSSRNGASNGTPANWLELEI--EFDMPDAVVPASGVFSVKLLRA 579
            :|....|..:   ||..|     .|:.:..|.....::|.|  ..:.|...:...|..|..... 
  Rat   553 VNGETLLGKSNHEAMETL-----RRSMSMEGNIRGMIQLVILRRLERPLEEISECGALSRPCFE- 611

  Fly   580 GKCGLGLSVSGSSHGGLVISDVKMGSPAHRSGSLRSGDILLAVDQHPVQHFNVDALLKEEGRSQN 644
             .|...||.|                  .|:.|    .:|.....:..|....|.||..:|.::|
  Rat   612 -NCQEALSAS------------------RRNDS----SLLYPCGTYSPQDKRKDLLLPSDGWAEN 653

  Fly   645 ------PSHSS-----SDFTTLTIK-------------RIVLP---------------DFLPMSS 670
                  |.|.|     .||:..:..             |||.|               |.:|..|
  Rat   654 EVPPSPPPHPSLEWGLEDFSHSSRVDSTGYFPDQHVNFRIVTPVGQPESINLKASKSMDLVPDES 718

  Fly   671 PIYS----NCPASGINLGMGMGVSTSTDHDLYSSAYVTAGKYADCVSLKSRTPQPDYFRVPSMDD 731
            .:.|    ...:.|.:.|..:|:..|:..:...:|.....|.    .|....|:|...|      
  Rat   719 KVQSLADRRSDSPGKDFGPTLGLKKSSSLESLQTAVAEVRKN----DLPFHRPRPHMVR------ 773

  Fly   732 ASLQSVQLRSGSGSNGGNQAANSWSTGVNSRSYVAPPNTQSLTTELPEEEDEQEQMYPGYELNRY 796
                      |.|.|...:||       ..:||..|            ||.|.:.:......:.:
  Rat   774 ----------GRGCNESFRAA-------IDKSYDGP------------EEAEADGLSDKSSHSGH 809

  Fly   797 ASVDCTALP------PPMENK---VYGSAASSSSKSSG---------SSLHQIIFTVRLEPKGGL 843
            .:::|.:.|      ..:|||   |..:......|..|         ...|:  .|.|...:.|.
  Rat   810 TALNCESAPQGNPELDDVENKAKNVKKTKEKEKKKGKGKMKVKEKKQKEEHE--DTERKMKRKGF 872

  Fly   844 LGITLAGSEDITKSITISGLVEGGIAHKNGQIHVGDQLL---------------AIDEHSVQGMP 893
            ..:...|.:...|    .|..|.....|:|  |.|::.|               .:.|...:|: 
  Rat   873 GAMLRFGKKKDDK----VGKTEQKGTQKSG--HPGEEELERMKEERERIGAKHQELREKQARGL- 930

  Fly   894 LSHATSLLQNLGDLVDLKILRSHDLANGSHLPQTQAIYAKVQRRPRSPSANT 945
            :.:||.....:.|:.|.::..::...|....|.|.   |.|.|.|..|.|.|
  Rat   931 VDYATVATGPVHDIDDDEMDPNYARVNHFREPCTS---ANVFRSPSPPRAGT 979

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 19/66 (29%)
PDZ_signaling 183..254 CDD:238492 18/91 (20%)
PDZ_signaling 278..375 CDD:238492 34/157 (22%)
PDZ 496..>521 CDD:294084 6/24 (25%)
PDZ_signaling 571..658 CDD:238492 19/97 (20%)
PDZ_signaling 832..913 CDD:238492 18/95 (19%)
PDZ_signaling 973..1055 CDD:238492
Pard3bNP_001178737.1 DUF3534 1..143 CDD:288873 17/81 (21%)
PDZ_signaling 201..288 CDD:238492 19/96 (20%)
PDZ 380..469 CDD:214570 22/96 (23%)
PDZ_signaling 501..589 CDD:238492 23/111 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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