DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and Pdzd7

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001099832.2 Gene:Pdzd7 / 293996 RGDID:1309882 Length:1031 Species:Rattus norvegicus


Alignment Length:1004 Identity:190/1004 - (18%)
Similarity:326/1004 - (32%) Gaps:321/1004 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 ITVERE-SGCLGLTLRGGADYPL--IVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQ 245
            :.||:. ||.||.::|||:::.|  .|:.|.......:.| :..||::..|:.:||...|:..|.
  Rat    87 VCVEKSPSGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAV 150

  Fly   246 QIIKCGGHVSGYTNLTIEYDVSVVQSVEFSMGPLL-IEIERPMNDKLGLVLCNYTAAVPASGSGS 309
            :::..    |...::.:. .:..|..::||..... :::   :|.:|.:..|:.|.:..:|..|.
  Rat   151 RLLTS----SSRLHMMVR
-RMGRVPGIKFSKEKTTWVDV---VNRRLVVEKCSSTPSDSSSEDGV 207

  Fly   310 S------TPSS---------GEKIEESAGVFIASILPASIADRCGALSVGDQVLSIDDTMIEHTA 359
            .      |.|.         |.| |...|::::.:....:|:..| :.||||||:.:....:..:
  Rat   208 RRIVHLYTTSDDFCLGFNIRGGK-EFGLGIYVSKVDHGGLAEENG-IKVGDQVLAANGVRFDDIS 270

  Fly   360 FSPD-EV--------MTILDTSTGRGYTQM----------------QIMPAHALARRGHTTLGSP 399
            .|.. ||        :||.:|.....|.:|                |:.||              
  Rat   271 HSQAVEVLKGQTHIMLTIKETGRYPAYKEMVSEYCWLDRLSNGVLQQLSPA-------------- 321

  Fly   400 KYSFSTLESRKSSTAGRQRQRFARKSSLPLEN-PAC-GTPGSTGGSMGTGGIHGSSSLGMGLGLC 462
            ..|.|::.|..||..       ....|||.:. ..| |....|....|.|....:......:|..
  Rat   322 SESSSSVSSYASSAP-------CSSGSLPSDRMDVCLGPEDPTSQGPGWGRADTAMQTEPDMGGS 379

  Fly   463 RAESFPVLLDCSHGAGIILSETVSGSGGSGA-----------------VAIAQIVP--------- 501
            |.|::     ||....:||.:|...|.|..:                 :|:::..|         
  Rat   380 RVETW-----CSVRPTVILRDTAIRSDGPSSTRHLDSALSESPKTALLLALSRPRPPITRSQSHL 439

  Fly   502 -------DSVADRSGCIQAGDRIVAINKMYSLDAAAMRQLLEGGSSRNGASNGTPANW------- 552
                   ....::||  .:|:: .|:.:..:|    |....:||.....|.:|....|       
  Rat   440 TLWEEKKQRKKEKSG--SSGEK-GALQRSKTL----MNLFFKGGRQGRPAGDGHREAWTLDSRSP 497

  Fly   553 --LELEIEFDMPDAVVPASGVFSVKLLRAGKCGLGL--SVSGSSHG------------------- 594
              :...::.:...:|.|.....:.:|.|..:.|..|  :.|||..|                   
  Rat   498 TKVRPRLDLEKAGSVGPVQKFVTWRLRRDRERGRALLSARSGSPSGQGPNVDEQMQAWESRRPLI 562

  Fly   595 -----GLVISDVKMGSPAHRSGSLRSGDI------LLAVDQHPVQHFNVDALLKEEGRSQNPSHS 648
                 .|:..|..:....|.|..:..|.:      |||:...|.:     .||..:.||......
  Rat   563 QDLARRLLTDDEVLAVTRHCSRYVHEGGVEDLVRPLLAILDRPAK-----LLLLRDIRSVVAPTD 622

  Fly   649 SSDFTTLTI-----------KRIVLPDFL-------PMSSPIYSNCPASGINLGMGMGVSTSTDH 695
            ...|.::.:           .|.|.|..|       |....:.:..|.|.....:....|.|.|.
  Rat   623 LGRFDSMVMPVEMEAFEALKSRAVGPSALRPTRQDTPPKRHLITPVPDSRGGFYLLPVNSCSEDE 687

  Fly   696 DLYSSAYVTAGKYAD-----CVSLKSRTPQPDYFRVPSMDDASLQSVQLRSGSGSNGGNQAANSW 755
            |         |:..:     .|||.:..|.  :..:|.:.|..:.:..||.|:      .|....
  Rat   688 D---------GEIRERLGGLKVSLGASAPH--HKGIPPLQDVPVDAFSLRRGA------CAPPPQ 735

  Fly   756 STGVNSRSYVAPPNTQSLTTELPEEEDEQ--EQMYPGYELNRY--------------------AS 798
            ...|..|    ||....|.||.|..||.|  :...||...:|.                    .|
  Rat   736 PPPVAPR----PPRPNWLLTEPPSREDTQQNQNQTPGQSCSRSRSHSRSRSGSRSRSRSQGRGKS 796

  Fly   799 VDCTALP----------------------------------------PPMENKVYGSAASSSSKS 823
            ..|...|                                        .|:||.:..:|...:..:
  Rat   797 AGCRRSPSPAPITTATSANGRYHRPRKARPLLPRPLDGQVAKVGVRQEPLENGIDQTAEDEAGNA 861

  Fly   824 SGSSLHQIIFTVRLEPKGGLLGITLAG--SEDITKSITISGLVEGGIAHKNGQIHVGDQLLAIDE 886
            :...|.    ||.|......|||:::|  ...:...:.|..:..||.|.....:..|.:|:|:|.
  Rat   862 TTGELR----TVTLSKMKQSLGISISGGIESKVQPMVKIEKIFPGGAAFLCRALQAGFELVAVDG 922

  Fly   887 HSVQGMPLSHATSLLQNL--------GDLV-------------DLKILRSHDLANGS-------- 922
            .|::.:....|...::..        .:||             :|:.::...||..|        
  Rat   923 ESLEQVTHQRAVDTIRRAYRNKAREPMELVVRVPGPGLLPLSSNLRAIKGQGLAADSSSAHGPIE 987

  Fly   923 ------HLPQTQA-----IYAKVQRRPRS 940
                  .||.|:|     ..:.||:.|:|
  Rat   988 DTPILTQLPPTEARQLRHALSSVQKVPQS 1016

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492 20/72 (28%)
PDZ_signaling 278..375 CDD:238492 26/121 (21%)
PDZ 496..>521 CDD:294084 5/40 (13%)
PDZ_signaling 571..658 CDD:238492 22/129 (17%)
PDZ_signaling 832..913 CDD:238492 20/103 (19%)
PDZ_signaling 973..1055 CDD:238492
Pdzd7NP_001099832.2 PDZ_signaling 84..164 CDD:238492 21/81 (26%)
PDZ_signaling 209..289 CDD:238492 18/81 (22%)
HN_PDZD7_like 555..632 CDD:259824 14/81 (17%)
PDZ_signaling 866..954 CDD:238492 20/91 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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