DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and smz-2

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_491965.1 Gene:smz-2 / 172415 WormBaseID:WBGene00020661 Length:274 Species:Caenorhabditis elegans


Alignment Length:195 Identity:33/195 - (16%)
Similarity:74/195 - (37%) Gaps:59/195 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 TSKLAQITVERESG-CLGLTLRGGADYPLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTL 241
            :.|:.:|.::.|.| .||.|    .:..|::|.::. |.: ..|:::.||::.:|:     |:..
 Worm     3 SEKMIEICIDMEEGEPLGAT----PNDKLVITKIQA-GTI-SEGKLRIGDQVKKVN-----GQNC 56

  Fly   242 AEAQQIIKCGGHVSGYTNLTIEYDVSVVQSVE--------------------FSMGPLLIEIERP 286
            .:.....:.....:....:|:..|....:.:|                    :.:..|:.....|
 Worm    57 KDCNDFFRALRFAAPCAKITVNRDEKKAEELEARVHIPEDRAKIIQRREGYVYELATLVWVQNGP 121

  Fly   287 MNDKLGLVLCNYTAAVPASGSGSSTPSSGEKIEESAGVFIASILPASIADRCGALSVGDQVLSID 351
               ||||.:.::                      ...|.::.:.|.|:|::|  |.:||.:..:|
 Worm   122 ---KLGLGIKHF----------------------QNRVLVSRVDPGSLAEKC--LVLGDHLCDVD 159

  Fly   352  351
             Worm   160  159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492 14/71 (20%)
PDZ_signaling 278..375 CDD:238492 15/74 (20%)
PDZ 496..>521 CDD:294084
PDZ_signaling 571..658 CDD:238492
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
smz-2NP_491965.1 PDZ_signaling 7..77 CDD:238492 14/80 (18%)
PDZ_signaling 114..188 CDD:238492 15/73 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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