DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and F23C8.13

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_740810.2 Gene:F23C8.13 / 171799 WormBaseID:WBGene00017741 Length:244 Species:Caenorhabditis elegans


Alignment Length:140 Identity:31/140 - (22%)
Similarity:52/140 - (37%) Gaps:36/140 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 STIGLSNQKVMNMLCAGGSDACPAIVE--------IEYSLPECTVSQNSLCVTSKLAQITVERES 190
            |.|...:::.....|:..:|.    ||        :|.|:|..|...|                 
 Worm    17 SAISYDDEEPTTTKCSNDNDD----VEDGNIEKQILEISIPRDTEQPN----------------- 60

  Fly   191 GCLGLTLR--GGADYPLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIKCGGH 253
               |:..|  |.....:.|.::.|..|  ::..::.||||||.:.:||...::.:|..|.:....
 Worm    61 ---GMAFRMVGSRSRGIFVDYIHPDSP--QSTHLREGDRLLRCNKISLRAVSVDQAASIFRFWMS 120

  Fly   254 VSGYTNLTIE 263
            .|....|.||
 Worm   121 RSDSLTLLIE 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 2/12 (17%)
PDZ_signaling 183..254 CDD:238492 16/72 (22%)
PDZ_signaling 278..375 CDD:238492
PDZ 496..>521 CDD:294084
PDZ_signaling 571..658 CDD:238492
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
F23C8.13NP_740810.2 PDZ_signaling 47..130 CDD:238492 23/104 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160156069
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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