DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and Pdzd3

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_573489.2 Gene:Pdzd3 / 170761 MGIID:2429554 Length:498 Species:Mus musculus


Alignment Length:601 Identity:123/601 - (20%)
Similarity:207/601 - (34%) Gaps:216/601 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 DTALA-------PMLSVDR-AMSPAQSEDSG------------LAPERGTTYATITLPRNALHLA 93
            ||||.       |.|.:|. .:|.|:.:|..            |:.|...|:        ..||.
Mouse     9 DTALLTLKFKFNPRLGIDNPVLSLAEDQDQSDPWNLHRPRFCLLSKEEEKTF--------GFHLQ 65

  Fly    94 ITFAERNDLSYPPVVGSLNPVGHAA--DFLAPGDRLHQIDG-----------ISTIGLSNQKVMN 145
            ....:.:.     ||..::| |.:|  ..|..|||:..::.           :..|..|..:|:.
Mouse    66 QHLGKADH-----VVCRVDP-GTSAQRQGLREGDRILAVNNNIVAHEDHAVVVRYIRASGPRVLL 124

  Fly   146 MLCA----------GGSDA--CPAIVEIEYSLPECTVSQNSLCVTSKLAQITVERESGCLGLTLR 198
            .:.|          .||||  ||       :||...  :..||        .|.::.|..|.::.
Mouse   125 TVLAQHVHDVARVLQGSDAFLCP-------TLPSGV--RPRLC--------HVVKDEGGFGFSVT 172

  Fly   199 GGADYPLIVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEA-QQIIKCGGHVSGYTNLTI 262
            .|:..|..:  |...|...:...:.||.|||.|:..|:...|..:. :::.:.|..|:       
Mouse   173 HGSRGPFWL--VLSAGGAAERAGVPPGARLLEVNGASVEKLTYNQLNRKLWQSGDQVT------- 228

  Fly   263 EYDVSVVQSVEFSMGPLLI---EIERPMNDKLGLVLCNYTAAVPASGSGSSTPSS---------- 314
                            ||:   |:|...: :||:.|     |.|.: .|.:.|:.          
Mouse   229 ----------------LLVAGLEVEEQCH-QLGMPL-----AAPLA-EGWALPAKPRCLNIEKGP 270

  Fly   315 ---GEKIEESAGV------FIASILPASIADRCGALSVGDQVLSI----------DDTMIEHTAF 360
               |..:.|..|:      |:..:.|...||:.| :..||:::::          ::|:....|.
Mouse   271 EGFGFLLREEKGLDGRLGQFLWDVDPGLPADKAG-MKAGDRLVAVAGESVDGLGHEETVSRIRAQ 334

  Fly   361 SPDEVMTILDTSTGRGYTQMQIMPAHALARRGHTTLGSPKYSFSTLESRKSSTAGRQRQRFARKS 425
            .....:.::|....|.::.:::.|...|.   :|.:.:|.                    .|...
Mouse   335 GSCVSLIVVDPEADRFFSMVRLSPLLFLE---NTEIAAPP--------------------LAETK 376

  Fly   426 SLPLENPACGTPGSTGGSM------GTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILSET 484
            .||:|:..  .|....||.      |.||       |.|..||...|.|.|.             
Mouse   377 DLPVEDTV--EPSGLAGSCQCFLYPGPGG-------GYGFRLCCVASGPCLF------------- 419

  Fly   485 VSGSGGSGAVAIAQIVPDSVADRSGCIQAGDRIVAINKMYSL----DAAAMRQLLEGGSS---RN 542
                       |:|:.|...|.|:| :|.||.::.:|. |.:    :...::||.|....   :.
Mouse   420 -----------ISQVTPGGSAARAG-LQVGDTVLEVNG-YPVGGDSELDRLQQLTEAEPPLCLKL 471

  Fly   543 GASN--GTPANWLELE 556
            ||.|  |..| |:.||
Mouse   472 GARNPQGLEA-WISLE 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 14/77 (18%)
PDZ_signaling 183..254 CDD:238492 16/71 (23%)
PDZ_signaling 278..375 CDD:238492 24/128 (19%)
PDZ 496..>521 CDD:294084 9/24 (38%)
PDZ_signaling 571..658 CDD:238492
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
Pdzd3NP_573489.2 PDZ_signaling 47..127 CDD:238492 17/93 (18%)
PDZ_signaling 155..232 CDD:238492 21/109 (19%)
PDZ 260..345 CDD:214570 12/85 (14%)
PDZ_signaling 407..471 CDD:238492 19/89 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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