DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and Patj

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_038965114.1 Gene:Patj / 140581 RGDID:1565362 Length:1858 Species:Rattus norvegicus


Alignment Length:827 Identity:171/827 - (20%)
Similarity:287/827 - (34%) Gaps:292/827 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 SGYTNLTIEYDVSVVQSVEFSMGPLLIEIERPMNDKLGLVLCNYTAAVPASGSGSSTPSSGEKIE 319
            ||..:.|     ||:|.:........|:||||....||.       :|.|..|            
  Rat   114 SGNEDFT-----SVIQQMAQGRHIEYIDIERPSTGGLGF-------SVVALRS------------ 154

  Fly   320 ESAG---VFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTGRGYTQMQ 381
            :|.|   :|:..:.|.|:|||...|...||:|:|:||.::.. .|..:.:.:|..:||    .::
  Rat   155 QSLGLIDIFVKEVHPGSVADRDQRLKENDQILAINDTPLDQN-ISHQQAIALLQQATG----SLR 214

  Fly   382 IMPAHALARRGHTTLGSPKYSFSTLESRKSSTAG----RQRQRFARKSSLPLENPACGTPGSTGG 442
            ::.|..:   |||            :||.|:::.    .:..|:.....:.|.|.          
  Rat   215 LVVAREV---GHT------------QSRTSTSSADTTLPETVRWGHTEDVELIND---------- 254

  Fly   443 SMGTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILSETVSGSGGSGAVAIAQIVPDSVADR 507
                         |.|||.                ||:       .|.|..|.:..|||..:|||
  Rat   255 -------------GSGLGF----------------GIV-------GGKSSGVVVRTIVPGGLADR 283

  Fly   508 SGCIQAGDRIVAI--NKMYSLDAAAMRQLLE--GGSSRN----------GASNGTPANWLELEIE 558
            .|.:|.||.|:.|  ..:..:.:..:.|:|.  |.|.|.          ..:..|||:     :.
  Rat   284 DGRLQTGDHILKIGSTNVQGMTSEQVAQVLRNCGNSVRMLVARDPVGEIAVTPPTPAS-----LP 343

  Fly   559 FDMPDAVVPASG-------VFSVKLLRAGKCGLGLSV---SGSSH----GGLVISDVKMGSPAHR 609
            ..:|.......|       .::|:|::.....||:.:   .|::|    .|:.:..:..||.|:.
  Rat   344 VALPVVATRTLGSDSSPFETYNVELVKKDGQSLGIRIVGYVGTAHPGEASGIYVKSIIPGSAAYH 408

  Fly   610 SGSLRSGDILLAVDQHPVQHF---NVDALLKEEGR-------------SQNPSHSSSDFTTL--- 655
            :|.::..|.::|||...:|.|   :|..:|:..|:             |.:|....|....:   
  Rat   409 NGQIQVNDKIVAVDGVNIQGFANQDVVEVLRNAGQVVHLTLVRRKTSLSASPFEQPSSREAVAEP 473

  Fly   656 ---------------------------------TIKRIVLPDFLPMSSPIYSNCPASGI------ 681
                                             |::.:..||..|...|   .||.:.:      
  Rat   474 PEVPELTGSLKPETNSRMEAEEIGERLDNLRKDTVQALEKPDVYPEDIP---GCPENELKSRWEN 535

  Fly   682 ---------------------------------NLGMGMGVSTSTDHDLYSSAYVTAGKYADCVS 713
                                             .|.:||.|.:...|...||  :..|...|.::
  Rat   536 LLGPDYEVMVATLDTQIADDEELQKYSKLLPIHTLRLGMEVDSFDGHHYISS--IAPGGPVDTLN 598

  Fly   714 LKSRTPQPDYFRVPSMDDASLQSVQLRSGSGSNGGNQAANSWSTGVNSRSYVAPPNTQSLTTELP 778
            |..  |:.:...|                   ||......|....|:....|.||.|......|.
  Rat   599 LLQ--PEDELLEV-------------------NGVQLYGKSRREAVSFLKEVPPPFTLVCCRRLF 642

  Fly   779 EEEDEQEQMYPGYELNRYASVD--CTALPPPMENKVYGSAASSSSKSSG--SSLHQIIFTVRL-- 837
            ::|               ||||  .|..|..:|.:|..|...|:....|  :.....:.||.|  
  Rat   643 DDE---------------ASVDEPRTVEPSLLEAEVDRSVDVSTEDDDGELALWSPEVKTVELVK 692

  Fly   838 EPKGGLLGITLAGSED----ITKSITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQGMPLSHAT 898
            :.||  ||.::...:|    :...|.|..||..|:|.::|::..||:|::::|.|:....|:.|.
  Rat   693 DCKG--LGFSILDYQDPLDPMRSVIVIRSLVADGVAERSGELLPGDRLVSVNEFSLDNATLAEAV 755

  Fly   899 SLLQ-------NLG---DLVDLK--------ILRSHDLANGSHLPQT 927
            .:|:       :||   .||:.:        |..|::..:.|..|:|
  Rat   756 EVLKAVPPGVVHLGICKPLVEEEKEEKEEHFIFHSNNNGDNSESPET 802

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492
PDZ_signaling 278..375 CDD:238492 28/99 (28%)
PDZ 496..>521 CDD:294084 12/26 (46%)
PDZ_signaling 571..658 CDD:238492 24/145 (17%)
PDZ_signaling 832..913 CDD:238492 27/104 (26%)
PDZ_signaling 973..1055 CDD:238492
PatjXP_038965114.1 L27_2 8..65 CDD:312549
PDZ_signaling 135..218 CDD:238492 29/106 (27%)
PDZ_signaling 248..325 CDD:238492 28/122 (23%)
PDZ_signaling 366..450 CDD:238492 20/83 (24%)
CtpA <391..>511 CDD:223864 18/119 (15%)
PDZ_signaling 572..636 CDD:238492 19/86 (22%)
PDZ 684..773 CDD:214570 25/90 (28%)
PDZ_signaling 1074..1165 CDD:238492
PDZ 1244..1329 CDD:214570
PDZ 1471..1578 CDD:214570
PDZ_signaling 1590..1670 CDD:238492
PDZ_signaling 1731..1816 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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