DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and dlg1a

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_005165955.1 Gene:dlg1a / 114446 ZFINID:ZDB-GENE-010724-8 Length:935 Species:Danio rerio


Alignment Length:412 Identity:101/412 - (24%)
Similarity:171/412 - (41%) Gaps:77/412 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   688 GVSTSTDHDLYSSAYVTAGKYADCVSLKSRTPQPDYFRVPSMD----------DASLQSVQLRSG 742
            |.||....::.:.|:.|.  |:....|...:|.|......|:|          |...:.:.|..|
Zfish   175 GPSTLGGEEVPAPAFATL--YSQSDILIQASPAPVVVNTESLDSSPYVNGTEADYEYEEITLERG 237

  Fly   743 SGSNGGNQAANSWSTGVNSRSYVAPPNTQSLTTELPEEEDEQEQMYPGYELNRYASVDCTALPPP 807
            :...|.:.|      |.....::....:..:|..:|.....|:        .|....||......
Zfish   238 NSGLGFSIA------GGTDNPHIGEDPSIFITKIIPGGAAAQD--------GRLRVNDCILRVND 288

  Fly   808 ME-NKVYGSAASSSSKSSG----------SSLHQIIFTVRL--EPKGGLLGITLA---GSEDI-- 854
            :: ..|..|.|..:.|.:|          ..|.:.|..|:|  .|||  ||.::|   |::.|  
Zfish   289 VDVRDVTHSNAVEALKEAGCIVRLYVRRRKPLSEKIMDVKLVKGPKG--LGFSIAGGVGNQHIPG 351

  Fly   855 TKSITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQGMPLSHATSLLQNLGDLVDLKILRSHDL- 918
            ..||.|:.::|||.|||:|::.:||:|||::...::.:....|.:.|:|..|:|.||:.:...: 
Zfish   352 DNSIYITKIIEGGAAHKDGRLQIGDKLLAVNAVCLEEVTHEDAVAALKNTPDVVYLKVAKPTSVF 416

  Fly   919 ANGSHLP---------------QTQAIYAKVQRRPRSPSANTEASKESGSGNANGGGAVNGNSGS 968
            .|.|:.|               .||: |......|.:||..:..||          |.:..:..:
Zfish   417 MNDSYAPPDVTSSYSQHMENHISTQS-YLSQPLTPATPSRYSPVSK----------GMLGDDEIT 470

  Fly   969 GKPRVFHVTLYKDKVYDDYGFSVSDGLYERGVFINRIRSGGPADMCGLLKPFDRIMQVNEMKTQD 1033
            .:||  .:.|::...  ..||::..|....|:||:.|.:|||||:||.|:..|||:.||.:..:.
Zfish   471 REPR--KIVLHRGTT--GLGFNIVGGEDGEGIFISFILAGGPADLCGELRKGDRIVSVNGVDLRS 531

  Fly  1034 FDCCLTVPLIAAAGDKIEMIMQ 1055
            .........:..||..:.:|.|
Zfish   532 ATHEQAAAALKNAGQTVTIIAQ 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084
PDZ_signaling 183..254 CDD:238492
PDZ_signaling 278..375 CDD:238492
PDZ 496..>521 CDD:294084
PDZ_signaling 571..658 CDD:238492
PDZ_signaling 832..913 CDD:238492 33/87 (38%)
PDZ_signaling 973..1055 CDD:238492 24/81 (30%)
dlg1aXP_005165955.1 L27_1 4..62 CDD:286187
MAGUK_N_PEST 109..230 CDD:287565 12/56 (21%)
PDZ_signaling 231..315 CDD:238492 16/97 (16%)
PDZ_signaling 324..410 CDD:238492 33/87 (38%)
PDZ_assoc 411..474 CDD:287558 12/73 (16%)
PDZ 472..556 CDD:214570 27/86 (31%)
SH3 588..661 CDD:302595
Guanylate_kin 744..922 CDD:279019
GuKc 755..922 CDD:214504
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23119
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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