DRSC/TRiP Functional Genomics Resources

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Protein Alignment Grip and lnx1

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_017950997.2 Gene:lnx1 / 100487348 XenbaseID:XB-GENE-952178 Length:742 Species:Xenopus tropicalis


Alignment Length:682 Identity:143/682 - (20%)
Similarity:246/682 - (36%) Gaps:178/682 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 CVPGKSAALKQDQQQQQQQQQESHNNSFNGHHHPPTDTALAPMLSVDRAMSPAQSEDSG-----L 72
            |.......|.::::::.|......::|.:     .|..|::|.||...|::.| :|::|     .
 Frog   133 CKGASHYGLTKERKRRSQDSSADCSSSLD-----LTVAAVSPELSASAAIALA-TEETGQDNPAF 191

  Fly    73 APERGTTYATITLPRNA-LHLAITFAERNDLSYPPVVGSLN--PVGHAADFLAPGDRLHQIDGIS 134
            :|.:|.::.......|. |:     ..||.......|.||:  .:..|...|.     ....|.|
 Frog   192 SPAKGESHTACEAEENCRLN-----RNRNRNFERSTVRSLSFKKLNRAFSVLR-----RTKSGSS 246

  Fly   135 TIGLSNQKVMNMLCAGGSDACPAIVEIEYSLPECTVSQNSLCVTSKLAQITVERE--SGCLGLTL 197
            .:..|:::..|:..|.       |||....||.    |..|....::..|.:.|.  :..||:.:
 Frog   247 VVHASDRERANLQNAN-------IVEDPMGLPR----QYHLIPDGEITCIKINRADLNEILGIRI 300

  Fly   198 RGGADYPL---IVTHVRPHGPVYKTGRIKPGDRLLRVDNVSLIGKTLAEAQQIIKCGGHVSGYTN 259
            .||.:.||   |:.|:...|.:.:.||:.|||.:|:|:.:.:.......|..:::   ..|....
 Frog   301 VGGNETPLTQIIIQHIYQDGVIGRDGRLLPGDMILKVNGIDISSVPHTYALSVLR---QPSKVLR 362

  Fly   260 LTIEYDVSVVQSVEFSMGPLLIEIERPMNDKLGLVLCNYTAAVPASGSGSSTPSSGEKI---EES 321
            ||:..:    |..:.....:.:|...|.:|.:.:||          ...|.....|.|:   .:.
 Frog   363 LTVLRE----QRYKCRTNGVNMEQHSPQDDSIHVVL----------NKSSHDVQLGIKLVRRRDE 413

  Fly   322 AGVFIASILPASIADRCGALSVGDQVLSIDDTMIEHTAFSPDEVMTILDTSTGRGYTQMQIMPAH 386
            .|::|.::|...:|.|.|.|...|:||||:...:.:.  :|:....::..|....|.   |:..|
 Frog   414 PGIYIFNLLEGGVAARDGYLQENDRVLSINGHDLRNG--TPEIAAQLIQASEEGVYF---IVSRH 473

  Fly   387 ALAR--------RGHTTLGSPKYSFSTLESRKSSTAGRQRQRFARKSSLPLENPACGTPGSTGGS 443
            :..:        |.|....||            :|...:|..|.:.:|..:              
 Frog   474 SRHQTPDILQEARWHNNNDSP------------ATCTNERNYFNKNASRTV-------------- 512

  Fly   444 MGTGGIHGSSSLGMGLGLCRAESFPVLLDCSHGAGIILSETVSGSGGSG-----AVAIAQIVPDS 503
                             ||..:...:..|.:...|:    ||:| |.|.     .:.:..:..|.
 Frog   513 -----------------LCHEKVVSITKDNTESLGM----TVAG-GASNWEWDLPIFVTSVDADG 555

  Fly   504 VADRSGCIQAGDRIVAIN-------------------------------KMY-----SLDAAAMR 532
            |..|.|.::.||.::.:|                               |.|     :|:.|...
 Frog   556 VIGRDGRLKTGDILLNVNGINLTGVSRSEAVSLLKNSSSSSVVLKALEIKEYEPEEDNLNNALYM 620

  Fly   533 QLLEGGSSRNGASNGTPANWLELEIEFDMPDAVVPASGVFSVKLLRAGKCG-LGLSVSGSSHG-- 594
            ..|:.||.:|...:.....||.|      |..:.....|    :||....| ||.|:.|.|..  
 Frog   621 DYLQNGSEQNREWSPVWVMWLNL------PHYLYSCREV----VLRRNTAGSLGFSIVGGSDDCS 675

  Fly   595 ---GLVISDVKMGSPAHRSGSLRSGDILLAVD 623
               ...|..:..|:|||..|.||.|||||.|:
 Frog   676 RIKPFFIKSILEGTPAHHDGRLRCGDILLEVN 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 13/67 (19%)
PDZ_signaling 183..254 CDD:238492 19/75 (25%)
PDZ_signaling 278..375 CDD:238492 22/99 (22%)
PDZ 496..>521 CDD:294084 6/24 (25%)
PDZ_signaling 571..658 CDD:238492 23/59 (39%)
PDZ_signaling 832..913 CDD:238492
PDZ_signaling 973..1055 CDD:238492
lnx1XP_017950997.2 mRING-HC-C3HC3D_LNX1 43..84 CDD:319693
PDZ_signaling 282..366 CDD:238492 22/86 (26%)
PDZ_signaling 390..470 CDD:238492 20/94 (21%)
PDZ_signaling 516..>585 CDD:238492 14/73 (19%)
PDZ_signaling 651..735 CDD:238492 23/61 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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