DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Grip and whrna

DIOPT Version :9

Sequence 1:NP_572285.2 Gene:Grip / 50391 FlyBaseID:FBgn0029830 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_002665968.3 Gene:whrna / 100334777 ZFINID:ZDB-GENE-091118-27 Length:939 Species:Danio rerio


Alignment Length:985 Identity:195/985 - (19%)
Similarity:331/985 - (33%) Gaps:273/985 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 PTDTALAPMLSVDRAMSPAQSEDSGLAPERGTTYATITLPRNALHLAITFAERNDLSYPPVVGSL 111
            |:...|.|||   |.:.|...:   |..::.|:        ..|:|......||........|:.
Zfish    75 PSKRQLLPML---RLVIPRSDQ---LLFDQYTS--------EGLYLKSEIHARNGDPDGAQEGAN 125

  Fly   112 NPVGHAADFLAPGDRLH-QIDGISTIGLSNQKVMNMLCAGGSDACPAIVEI--EYSLPECTVSQN 173
            :...|.|:|.|....|. ..|.|||               .||....::.:  ...|||      
Zfish   126 SSPTHGANFPASQVALRGSPDSIST---------------SSDGTATLIPLLGRNFLPE------ 169

  Fly   174 SLCVTSKLAQITVERESG--CLGLTLRGGADY--PLIVTHVRPHGPVYKTGRIKPGDRLLRVDNV 234
               ...::.|:.::|...  .||.::|||:::  .:.|:.|.|.....|.| ::.||::::|::.
Zfish   170 ---PPGEIRQVILKRHKSNEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRMGDQIMKVNDK 230

  Fly   235 SLIGKTLAEAQQIIK-----C----------GGHVSGYTNLTIEYDVSVVQSVEFSMGPLLIEIE 284
            .....|.|:|.:::|     |          ||:::.:....::     .|....|..|.|:...
Zfish   231 VFDRVTHADAVKVLKGSKKLCMSVRSVGRIPGGYITNHVYTWVD-----PQGRSVSPPPDLLAEH 290

  Fly   285 RP----------------MND----KLGLVLCNYTAAVPASGSGSSTPSSGEKI----EESAGVF 325
            |.                :.|    |:.|||             ....|.|..|    |.|.|::
Zfish   291 RSATLRRSNSQGRSHMQLLQDGDEKKVNLVL-------------DDGRSLGLMIRGGAEYSLGIY 342

  Fly   326 IASILPASIADRCGALSVGDQVLSIDD---TMIEHTAFSPDEVMTILDTSTGRGYTQMQIMPAHA 387
            |..:...|.|: ||.:.||||:|.::.   ..|.|     ||.:.:|.:|      ...:|....
Zfish   343 ITGVDRGSAAE-CGGIKVGDQILEVNGRSFLSIPH-----DEAVRVLKSS------HHLMMTVKD 395

  Fly   388 LARRGH--TTLGSPKYSFSTLESRKSSTAGRQRQRFARKSSLPLENPACGTPGSTGGSMGTGG-- 448
            :.|..|  |.:|..|:..|:..|..|:::.        .:.:.|:..| .|....|...|..|  
Zfish   396 VGRLPHTRTVVGETKWIASSQISDSSASSS--------VTGISLDQGA-STSAKGGFYKGVAGSQ 451

  Fly   449 IHGSSSLGMGLGLCRAESFPVLLDCSHGA-GIILSETVSGSGGSGAVAIAQIVPDSVADRSGCIQ 512
            :..||.:.....:...::..:|.:..... |..:.|...|..|...:.:|.....:...:...:.
Zfish   452 VTLSSLVNQSRAMLEEQARHLLTEPERQTMGYYIQEYRDGHVGVEQLVMALFELFNTHAKFSLLS 516

  Fly   513 AGDRIVAINKMYSLDAAAMRQLLEGGSSRNGASNGTPANWLELEIEFDM---PDAVVPASGVFSV 574
            ....||....:...|...:|:.::...:|.|...|       .:..|.|   ||.:..:|..|..
Zfish   517 EVRGIVTPQDVEKFDGLVLRREIDALKARQGGGAG-------FQDSFSMVSYPDTLASSSASFMT 574

  Fly   575 KLLRAGKCGLGLSVSGSSHGGLVISDVKMGSPAHRSGSLRSGDILLAVDQHPVQHFNV--DALLK 637
                      ..::|.:.:.|:..::.:.||                     ::|.|.  |..|.
Zfish   575 ----------NTTLSSARNDGVAENNGEQGS---------------------LEHSNALPDISLD 608

  Fly   638 EEGRSQNPSHSSSDFTTLTIKRIVLPDFLPMSSPIYSNCPASGINLGMGMGVSTSTDHDLYSSAY 702
            |       .||:||..         |.|.|...|.....|:....|......|:|     .|..|
Zfish   609 E-------VHSTSDSP---------PSFKPPPPPGLQRRPSRKATLSKRPSSSSS-----QSGLY 652

  Fly   703 VTAGKYADCVSLKSRTPQ-PDYFRVP----SMD-DASLQSVQLRSGSGSNGGNQAANSWSTGVNS 761
            .||...:.  :.:|:.|: |..|..|    .:| .||..||..:...|.....|:.|. :....|
Zfish   653 FTAPSRSH--TRESKHPKAPKAFMSPPGTLKIDVPASQLSVVSQHPIGPFPRVQSPNK-AKPAQS 714

  Fly   762 RSYVAPP----------------------------------NTQSLTTEL--PEEEDEQEQMYP- 789
            .|.:.||                                  |...:..|:  |..|.:..::.| 
Zfish   715 SSPIPPPAPNVPAPPGPPPPPPPPLPPPSCPDKPTPSSPASNQHFVMVEVHRPNAEPDVNEVRPL 779

  Fly   790 --------------GYELNRYASVDC--------TALPPPMENKV--YGSAASSSSKSSGSSLHQ 830
                          |..|:..:.||.        ...|.|...:.  .|.....:|......|..
Zfish   780 PQVRGGTLSQLSDSGQTLSEDSGVDIPESGRLSKDTSPRPARTRAPRDGHGGGETSAKPPGLLEP 844

  Fly   831 IIFTVRLEPKGGLLGITLAGS----EDITKSITISGLVEGGIAHKNGQIHVGDQLLAIDEHSVQG 891
            :...||:......|||.:.|.    :.:.:.:||.   .||.||..||:.||..:|.::..|::|
Zfish   845 MSTLVRVAKSASTLGIAIEGGANTRQPLPRIVTIQ---RGGSAHNCGQLKVGQVILEVNGVSLRG 906

  Fly   892 MPLSHATSLL 901
            .....|..|:
Zfish   907 KEHREAARLI 916

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GripNP_572285.2 PDZ 82..147 CDD:294084 14/65 (22%)
PDZ_signaling 183..254 CDD:238492 22/89 (25%)
PDZ_signaling 278..375 CDD:238492 30/123 (24%)
PDZ 496..>521 CDD:294084 3/24 (13%)
PDZ_signaling 571..658 CDD:238492 14/88 (16%)
PDZ_signaling 832..913 CDD:238492 21/74 (28%)
PDZ_signaling 973..1055 CDD:238492
whrnaXP_002665968.3 HN_L-whirlin_R1_like 25..102 CDD:259822 9/40 (23%)
PDZ_signaling 174..255 CDD:238492 20/81 (25%)
PDZ_signaling 314..394 CDD:238492 27/104 (26%)
HN_L-whirlin_R2_like 459..538 CDD:259823 10/78 (13%)
PDZ_signaling 848..919 CDD:238492 21/72 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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