DRSC/TRiP Functional Genomics Resources

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Protein Alignment ksh and Tmem167a

DIOPT Version :9

Sequence 1:NP_652499.2 Gene:ksh / 50363 FlyBaseID:FBgn0040890 Length:72 Species:Drosophila melanogaster
Sequence 2:XP_002729038.1 Gene:Tmem167a / 100359823 RGDID:2323318 Length:72 Species:Rattus norvegicus


Alignment Length:70 Identity:51/70 - (72%)
Similarity:62/70 - (88%) Gaps:0/70 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSALFNFHSLLSVILLLICTCAYLRSLFPSLIDRNKTGFMGTFWKLARIGERKSPWVGAACLIMA 65
            |||:|||.|||:|||||||||||:|||.||::||||||.:|.|||.|||||||||:|...|::||
  Rat     1 MSAIFNFQSLLTVILLLICTCAYVRSLAPSILDRNKTGLLGIFWKCARIGERKSPYVAICCIVMA 65

  Fly    66 FTVLF 70
            |::||
  Rat    66 FSILF 70

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kshNP_652499.2 DUF1242 <19..44 CDD:284305 17/24 (71%)
Tmem167aXP_002729038.1 DUF1242 10..44 CDD:399673 25/33 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339731
Domainoid 1 1.000 63 1.000 Domainoid score I10033
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41626
Inparanoid 1 1.050 113 1.000 Inparanoid score I4762
OMA 1 1.010 - - QHG53568
OrthoDB 1 1.010 - - D1596132at2759
OrthoFinder 1 1.000 - - FOG0001976
OrthoInspector 1 1.000 - - oto96769
orthoMCL 1 0.900 - - OOG6_102262
Panther 1 1.100 - - LDO PTHR13229
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3223
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.910

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