DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr12 and ush2a

DIOPT Version :9

Sequence 1:NP_652462.3 Gene:dpr12 / 50320 FlyBaseID:FBgn0085414 Length:326 Species:Drosophila melanogaster
Sequence 2:XP_009291422.1 Gene:ush2a / 568982 ZFINID:ZDB-GENE-060503-794 Length:5243 Species:Danio rerio


Alignment Length:234 Identity:48/234 - (20%)
Similarity:85/234 - (36%) Gaps:82/234 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 WHILSSGAQLYTNDERFAILHTPGSNMWT-LQIKFVQRRDHGMYECQVST----------PTGII 175
            |:.:.:|.:|:..|:        |.:.:| .:.|.|...|.|....:|:|          ||.|.
Zfish  2888 WYNVYAGTKLFHEDK--------GLSRYTWYEYKIVVHNDVGSASGEVATGVTLAGQPLKPTNIS 2944

  Fly   176 SHFVNLQVVVPE------AFILGSGELHV------------DMGSTINLVCIIEKSPTPPQYVYW 222
            :|.:|...::..      ..:.||.|:::            .:..|:..|.|.:..|: .||   
Zfish  2945 AHALNHTAILVNWTTPTLQDLQGSVEVYILTVVSDQHSQTLTLDPTVTSVFIPDLQPS-TQY--- 3005

  Fly   223 QKNDRLINYVDSRRDITIETTPGPRTQSRLIIREPQVTDSGNYTCSASNTEPASIYVFVSKGDNM 287
                          .:::..:.||..     |..|:|      .|:.::.||..::.......|.
Zfish  3006 --------------KLSLTVSNGPHN-----ITSPEV------NCTTTDGEPEGVFPPEVLTLNS 3045

  Fly   288 AAISRRKTSSADRLTHIFRSMLAPCLLLNTVVVRH-IFL 325
            .|:               |.|.||.||.|.|||:: |:|
Zfish  3046 TAV---------------RVMWAPPLLPNGVVVQYSIYL 3069

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr12NP_652462.3 IG 86..183 CDD:214652 17/71 (24%)
Ig_3 193..271 CDD:404760 14/89 (16%)
Ig strand B 204..208 CDD:409353 0/3 (0%)
Ig strand C 219..223 CDD:409353 1/3 (33%)
Ig strand E 250..254 CDD:409353 0/3 (0%)
Ig strand F 264..269 CDD:409353 1/4 (25%)
ush2aXP_009291422.1 Laminin_G_3 160..297 CDD:290121
Laminin_N 307..528 CDD:295486
EGF_Lam 529..577 CDD:238012
EGF_Lam 586..638 CDD:238012
Laminin_EGF 653..703 CDD:278482
Laminin_EGF 706..756 CDD:278482
EGF_Lam 759..797 CDD:214543
Laminin_EGF 808..857 CDD:278482
EGF_Lam 859..912 CDD:238012
EGF_Lam 913..963 CDD:238012
EGF_Lam 965..1014 CDD:238012
EGF_Lam 1015..1064 CDD:238012
FN3 1177..1253 CDD:238020
FN3 1264..1375 CDD:238020
FN3 1386..1469 CDD:214495
LamG 1537..1699 CDD:238058
LamG 1737..1890 CDD:238058
FN3 1981..2071 CDD:238020
FN3 2163..2253 CDD:238020
FN3 2258..2341 CDD:238020
FN3 2352..2443 CDD:238020
FN3 2447..2544 CDD:238020
FN3 2547..2633 CDD:238020
FN3 2635..2733 CDD:238020
FN3 2743..2807 CDD:238020
FN3 2830..2932 CDD:238020 12/51 (24%)
fn3 2939..3014 CDD:278470 14/92 (15%)
FN3 3032..>3099 CDD:238020 15/53 (28%)
FN3 3542..3611 CDD:238020
FN3 3615..3701 CDD:238020
fn3 3718..3784 CDD:278470
FN3 3801..3887 CDD:238020
FN3 3908..3971 CDD:238020
FN3 3996..4086 CDD:238020
FN3 4186..4284 CDD:238020
fn3 4288..4366 CDD:278470
FN3 4382..4465 CDD:238020
FN3 4470..4553 CDD:238020
FN3 4555..4653 CDD:238020
FN3 4679..4753 CDD:238020
fn3 4760..4830 CDD:278470
FN3 4864..4955 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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