DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr12 and Dscam3

DIOPT Version :9

Sequence 1:NP_652462.3 Gene:dpr12 / 50320 FlyBaseID:FBgn0085414 Length:326 Species:Drosophila melanogaster
Sequence 2:NP_996226.2 Gene:Dscam3 / 42103 FlyBaseID:FBgn0261046 Length:2087 Species:Drosophila melanogaster


Alignment Length:268 Identity:66/268 - (24%)
Similarity:102/268 - (38%) Gaps:71/268 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TLLLATTLEPDQKSILTDNDWKKLWMRGGIN--GDSKLDNNLDSSDSPMFEDSELMAHNTTVQLG 92
            ||||....:        :.|..| |:....|  |:.:::..|..:.   :....::.....|..|
  Fly   303 TLLLIKNAD--------ERDAGK-WICQASNQFGEQRIEIRLSVNS---YVSVHILPQVQIVNSG 355

  Fly    93 GTAFLVCKVSG--VDRVGVNWNQISWIRRRDWHILSSGAQLYTNDERFAILHTPGSNM-----WT 150
            |||...|..:|  :|.:             ||  |.:|..|..|:    .|.|...|:     .:
  Fly   356 GTANFNCTTTGSAIDAI-------------DW--LHNGKPLQANN----ALTTGRDNIRFLSKSS 401

  Fly   151 LQIKFVQRRDHGMYECQVSTPTGIISHFVNLQV--VVPE---AFILGSGELHVDMGSTINLVCII 210
            |.::.|.|||.|:|:|.|............|::  .|||   .||    |.:|..|..|:|.|..
  Fly   402 LLVQNVGRRDRGVYQCLVENQRASAQAMAELKLGDTVPELIYTFI----EQNVRPGPLISLKCSA 462

  Fly   211 EKSPTPPQYVYWQKNDRLIN-----------YVDSRRDITIETTPGPRTQSRLIIREPQVTDSGN 264
            ..|| |||:.:...:..:::           :||...|:.          |.|.|...:..|.|.
  Fly   463 SGSP-PPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSGDVI----------SHLNISHVRPDDGGL 516

  Fly   265 YTCSASNT 272
            |.|.|||:
  Fly   517 YKCVASNS 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr12NP_652462.3 IG 86..183 CDD:214652 27/103 (26%)
Ig_3 193..271 CDD:404760 22/88 (25%)
Ig strand B 204..208 CDD:409353 2/3 (67%)
Ig strand C 219..223 CDD:409353 0/3 (0%)
Ig strand E 250..254 CDD:409353 2/3 (67%)
Ig strand F 264..269 CDD:409353 2/4 (50%)
Dscam3NP_996226.2 IG 56..133 CDD:214652
Ig 56..125 CDD:143165
I-set 246..337 CDD:254352 10/42 (24%)
Ig 264..334 CDD:143165 9/39 (23%)
I-set 345..433 CDD:254352 26/106 (25%)
Ig 358..431 CDD:143165 22/91 (24%)
Ig 456..533 CDD:143165 21/80 (26%)
IGc2 553..619 CDD:197706
I-set 634..724 CDD:254352
ig 645..712 CDD:278476
IG_like 734..815 CDD:214653
Ig 745..815 CDD:299845
I-set 820..913 CDD:254352
Ig 838..920 CDD:299845
FN3 917..1033 CDD:238020
FN3 1040..1142 CDD:238020
fn3 1150..1237 CDD:278470
FN3 1263..1345 CDD:238020
Ig 1350..1436 CDD:299845
IG_like 1358..1436 CDD:214653
FN3 1441..1530 CDD:238020
FN3 1542..1620 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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