DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr12 and Dscaml1

DIOPT Version :9

Sequence 1:NP_652462.3 Gene:dpr12 / 50320 FlyBaseID:FBgn0085414 Length:326 Species:Drosophila melanogaster
Sequence 2:NP_001101611.1 Gene:Dscaml1 / 315615 RGDID:1304887 Length:2111 Species:Rattus norvegicus


Alignment Length:241 Identity:56/241 - (23%)
Similarity:85/241 - (35%) Gaps:55/241 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 LGGTAFLVCKVSGVDRVGVNWNQISWIRRRDWHILSSGAQLYTNDERFAILHTPG--------SN 147
            :|.|..|.|.::|.....:.|                    |.|.|    |..||        ||
  Rat   386 IGSTVILSCALTGSPEFTIRW--------------------YRNTE----LVLPGEAISIRGLSN 426

  Fly   148 MWTLQIKFVQRRDHGMYECQVSTPTGIISHFVNLQVVVPE----AFILGSGELHVDMGSTINLVC 208
            . ||.|...|:...|.|:|..:........|.   ::|.|    ..:....|..|:.|...:|:|
  Rat   427 E-TLLISSAQKSHSGAYQCFATRKAQTAQDFA---IIVLEDGTPRIVSSFSEKVVNPGEQFSLMC 487

  Fly   209 IIEKSPTPPQYVYWQKNDRLINYVDSRRDITIETTPGPRTQSRLIIREPQVTDSGNYTCSASNTE 273
            ..:.:|.|.  |.|..:|..:....|.|......:.| .|.|.:.:..||:.|.|.|.|:|.|: 
  Rat   488 AAKGAPPPT--VTWALDDEPVVRDGSHRTNQYTMSDG-TTISHMNVTGPQIRDGGVYRCTARNS- 548

  Fly   274 PASIYVFVSKGDNMAAISRRKTSSADRLTHIF----RSMLAPCLLL 315
                   |...:..|.|:.|...|...:.:|.    |..|..|.::
  Rat   549 -------VGSAEYQARINVRGPPSIRAMRNITAVAGRDTLINCRVI 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr12NP_652462.3 IG 86..183 CDD:214652 22/99 (22%)
Ig_3 193..271 CDD:404760 22/77 (29%)
Ig strand B 204..208 CDD:409353 1/3 (33%)
Ig strand C 219..223 CDD:409353 1/3 (33%)
Ig strand E 250..254 CDD:409353 1/3 (33%)
Ig strand F 264..269 CDD:409353 2/4 (50%)
Dscaml1NP_001101611.1 IG 101..173 CDD:214652
IGc2 101..168 CDD:197706
Ig 183..276 CDD:299845
IG_like 195..276 CDD:214653
I-set 291..369 CDD:254352
IGc2 298..359 CDD:197706
IGc2 386..447 CDD:197706 21/85 (25%)
I-set 466..560 CDD:254352 26/104 (25%)
Ig 466..556 CDD:299845 24/100 (24%)
IGc2 577..635 CDD:197706 3/11 (27%)
IG_like 665..744 CDD:214653
Ig 673..739 CDD:143165
I-set 748..843 CDD:254352
Ig7_DSCAM 765..843 CDD:143211
I-set 849..942 CDD:254352
Ig 861..949 CDD:299845
FN3 945..1039 CDD:238020
FN3 1046..1143 CDD:238020
fn3 1151..1237 CDD:278470
FN3 1249..1340 CDD:238020
IGc2 1364..1428 CDD:197706
FN3 1442..1532 CDD:238020
FN3 1546..1618 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.