DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr12 and Ncam1

DIOPT Version :9

Sequence 1:NP_652462.3 Gene:dpr12 / 50320 FlyBaseID:FBgn0085414 Length:326 Species:Drosophila melanogaster
Sequence 2:XP_038936733.1 Gene:Ncam1 / 24586 RGDID:67378 Length:1136 Species:Rattus norvegicus


Alignment Length:272 Identity:59/272 - (21%)
Similarity:105/272 - (38%) Gaps:45/272 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 LEPDQKSILTDNDWKKLWMRG---GINGDSKLDNNLDSSDSPMFEDSELMAH------------N 86
            |:.|.:.|:..|::  |.:||   ...|..:.:..:.:.....|:|.:::.:            |
  Rat   160 LKKDVRFIVLSNNY--LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVN 222

  Fly    87 TTVQLGGTAFLVCKVSGVDRVGVNWNQISWIRRRDWHILSSGAQLYTNDERFAILHTPGSNMWTL 151
            .|..||.:..|||...|.....::|              :...:...|:|.....|....:...|
  Rat   223 ATANLGQSVTLVCDADGFPEPTMSW--------------TKDGEPIENEEEDDEKHIFSDDSSEL 273

  Fly   152 QIKFVQRRDHGMYECQVSTPTGIISHFVNLQVVVPEAFILGSGELHVDMGSTINLVCIIEKSPTP 216
            .|:.|.:.|...|.|......|.....::|:|...........:..:::...:.|.|  |.|..|
  Rat   274 TIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAKPKITYVENQTAMELEEQVTLTC--EASGDP 336

  Fly   217 PQYVYWQKNDRLINYVDS---RRDITIETTPG---PRTQSR---LIIREPQVTDSGNYTCSASNT 272
            ...:.|:.:.|.|:..:.   .|....||..|   .|:.:|   |.::..|.||:|.|.|:||||
  Rat   337 IPSITWRTSTRNISSEEKASWTRPEKQETLDGHMVVRSHARVSSLTLKSIQYTDAGEYICTASNT 401

  Fly   273 ---EPASIYVFV 281
               :..|:|:.|
  Rat   402 IGQDSQSMYLEV 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr12NP_652462.3 IG 86..183 CDD:214652 20/96 (21%)
Ig_3 193..271 CDD:404760 22/86 (26%)
Ig strand B 204..208 CDD:409353 1/3 (33%)
Ig strand C 219..223 CDD:409353 0/3 (0%)
Ig strand E 250..254 CDD:409353 2/6 (33%)
Ig strand F 264..269 CDD:409353 2/4 (50%)
Ncam1XP_038936733.1 IgI_1_NCAM-1 20..116 CDD:409451
Ig strand B 37..41 CDD:409451
Ig strand C 51..55 CDD:409451
Ig strand E 79..83 CDD:409451
Ig strand F 93..98 CDD:409451
Ig strand G 107..110 CDD:409451
IG_like 124..190 CDD:214653 8/31 (26%)
Ig strand B 135..139 CDD:409353
Ig strand C 148..152 CDD:409353
Ig strand E 172..176 CDD:409353 1/5 (20%)
Ig strand F 186..191 CDD:409353 0/4 (0%)
IgI_3_NCAM-1 211..308 CDD:143207 21/110 (19%)
Ig strand B 231..235 CDD:143207 1/3 (33%)
Ig strand C 244..248 CDD:143207 1/17 (6%)
Ig strand E 271..275 CDD:143207 1/3 (33%)
Ig strand F 285..290 CDD:143207 2/4 (50%)
Ig strand G 298..301 CDD:143207 0/2 (0%)
IgI_NCAM-1 307..413 CDD:143277 27/107 (25%)
Ig strand B 326..330 CDD:143277 1/3 (33%)
Ig strand C 339..343 CDD:143277 0/3 (0%)
Ig strand E 379..383 CDD:143277 1/3 (33%)
Ig strand F 393..398 CDD:143277 2/4 (50%)
Ig strand G 406..409 CDD:143277 0/2 (0%)
Ig_3 422..494 CDD:404760
Ig strand B 433..437 CDD:409353
Ig strand C 446..450 CDD:409353
Ig strand E 473..477 CDD:409353
Ig strand F 487..492 CDD:409353
FN3 509..606 CDD:238020
fn3 619..701 CDD:394996
Herpes_BLLF1 <842..1133 CDD:282904
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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