DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr6 and lsamp

DIOPT Version :9

Sequence 1:NP_001287018.1 Gene:dpr6 / 50296 FlyBaseID:FBgn0040823 Length:396 Species:Drosophila melanogaster
Sequence 2:XP_031751462.1 Gene:lsamp / 100124984 XenbaseID:XB-GENE-5759171 Length:368 Species:Xenopus tropicalis


Alignment Length:253 Identity:71/253 - (28%)
Similarity:107/253 - (42%) Gaps:41/253 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 FDPSTPRNVTALMGKSAYLSCRVRNLANKTVSWIRHRDIHILTVGSYTYTSDQRFQATHHQDTED 139
            |:.||. |:|...|.:|.|.|.|.:.::: |:|:....  |:..|...::.|.|.: ...:...:
 Frog    34 FNRSTD-NITVRQGDTAILRCFVEDRSSR-VAWLNRSG--IIFAGDDKWSLDPRVE-LEKRSLLE 93

  Fly   140 WTLQIKWAQKRDAGMYECQIST-QPVRSYFVRLNVVVPTATILGGPDLHVDKGSTINLTCTVKFS 203
            ::|:|:.....|.|.|.|.:.| |..::..|.|.|.||........|:.|::||.:.|.|.....
 Frog    94 YSLRIQKVDVSDEGPYTCSVQTKQHTKTTQVYLIVQVPPKISNISADITVNEGSNVTLMCIAYGR 158

  Fly   204 PEPPAYIFWYHHEEVINYDSSRGGVSVITE-KGDVTTSFLLIQNADLADSGKYSCAPSN----AD 263
            |||  .|.|.|.       :...|.|...: :|:  ..||.||......||:|.|..:|    ||
 Frog   159 PEP--MITWRHL-------TPTAGTSPARDFEGE--EEFLEIQGITREQSGRYECKAANEVASAD 212

  Fly   264 VASVRVHVLNVRAIISGEHPEAMQTGSSGCQYNWLTIVLLLGLVLCYSSQQCSSAVPA 321
            |..|||.| |...||:........||..             .::.|.     :|||||
 Frog   213 VKQVRVTV-NYPPIITESKSNEATTGKQ-------------AILRCE-----ASAVPA 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr6NP_001287018.1 V-set 79..174 CDD:284989 24/95 (25%)
IG_like 80..175 CDD:214653 24/95 (25%)
IG_like 184..271 CDD:214653 30/91 (33%)
IGc2 191..262 CDD:197706 22/75 (29%)
lsampXP_031751462.1 Ig 38..128 CDD:416386 24/94 (26%)
FR1 38..54 CDD:409353 6/16 (38%)
Ig strand A' 39..45 CDD:409353 2/6 (33%)
Ig strand B 47..55 CDD:409353 3/7 (43%)
CDR1 55..59 CDD:409353 1/3 (33%)
FR2 60..67 CDD:409353 2/7 (29%)
Ig strand C 60..66 CDD:409353 2/6 (33%)
CDR2 68..78 CDD:409353 2/11 (18%)
Ig strand C' 70..73 CDD:409353 1/2 (50%)
Ig strand C' 75..78 CDD:409353 0/2 (0%)
FR3 79..114 CDD:409353 8/35 (23%)
Ig strand D 83..90 CDD:409353 1/7 (14%)
Ig strand E 93..99 CDD:409353 1/5 (20%)
Ig strand F 106..114 CDD:409353 3/7 (43%)
CDR3 115..119 CDD:409353 2/3 (67%)
Ig strand G 119..128 CDD:409353 2/8 (25%)
FR4 121..128 CDD:409353 2/6 (33%)
Ig_3 131..206 CDD:404760 24/85 (28%)
Ig strand A' 138..143 CDD:409353 1/4 (25%)
Ig strand B 149..156 CDD:409353 2/6 (33%)
Ig strand C 162..167 CDD:409353 2/4 (50%)
Ig strand C' 173..175 CDD:409353 1/1 (100%)
Ig strand E 185..191 CDD:409353 3/5 (60%)
Ig strand F 198..205 CDD:409353 3/6 (50%)
Ig strand G 212..220 CDD:409353 5/7 (71%)
Ig_3 223..302 CDD:404760 10/47 (21%)
putative Ig strand A 224..230 CDD:409353 2/5 (40%)
Ig strand B 240..244 CDD:409353 0/3 (0%)
Ig strand C 253..257 CDD:409353
Ig strand E 281..285 CDD:409353
Ig strand F 295..300 CDD:409353
Ig strand G 308..311 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I11916
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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