DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13056 and CG4962

DIOPT Version :9

Sequence 1:NP_652414.2 Gene:CG13056 / 50267 FlyBaseID:FBgn0040794 Length:99 Species:Drosophila melanogaster
Sequence 2:NP_648865.1 Gene:CG4962 / 39793 FlyBaseID:FBgn0036597 Length:123 Species:Drosophila melanogaster


Alignment Length:116 Identity:25/116 - (21%)
Similarity:39/116 - (33%) Gaps:40/116 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 MYLSFALLLCLLALGNADLQLYHPLMTLHH----------PPTFAKVGHLVEHVPTAVSHQSSTI 59
            |:...||:..|.|:.||.:     :....|          .|.:|... ::.|.|...|:.:..:
  Fly     1 MFKLIALISALCAVANAGV-----ISPYSHGYGLGYGAALAPAYAAPA-VISHAPIIKSYAAPIV 59

  Fly    60 VH---RSVPRTTSLLT---------------PALRST------YLNYPTWG 86
            .|   .|...|..:.|               |||.||      |..|.::|
  Fly    60 AHPVATSYANTYKVATKAIPVVHAAPLVHAVPALHSTSTYHGSYGGYGSYG 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13056NP_652414.2 Retinin_C 34..>83 CDD:282395 16/82 (20%)
CG4962NP_648865.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR34931
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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